Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.6e-45 184.5 90 100.0
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.3e-38 160.2 83 94.0
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.3e-38 160.2 83 94.0
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 7.3e-38 160.2 83 94.0
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.3e-34 149.4 73 98.6
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.3e-34 149.4 73 98.6
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.7e-34 147.9 73 97.3
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 4.9e-34 147.5 73 95.9
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.9e-34 147.5 73 95.9
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 2.4e-33 145.2 73 94.5
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 3.9e-31 137.9 73 87.7
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 7.3e-30 133.7 81 77.8
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 1.6e-29 132.5 73 84.9
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.6e-29 132.5 75 86.7
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 1.6e-29 132.5 74 87.8
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 1.6e-29 132.5 73 83.6
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.6e-29 132.5 73 83.6
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 2.1e-29 132.1 76 84.2
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 6.2e-29 130.6 81 76.5
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 8.1e-29 130.2 71 84.5
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 8.1e-29 130.2 76 82.9
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 8.1e-29 130.2 73 82.2
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 1.1e-28 129.8 73 80.8
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 1.1e-28 129.8 76 84.2
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 1.8e-28 129.0 76 82.9
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.8e-28 129.0 73 83.6
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 2.3e-28 128.6 71 88.7
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 3.1e-28 128.3 74 82.4
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 3.1e-28 128.3 73 80.8
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 4.0e-28 127.9 75 81.3
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 5.2e-28 127.5 75 81.3
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 5.2e-28 127.5 76 80.3
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 6.8e-28 127.1 76 81.6
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 8.9e-28 126.7 74 79.7
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 8.9e-28 126.7 73 80.8
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 8.9e-28 126.7 74 79.7
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.2e-27 126.3 74 82.4
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.2e-27 126.3 76 80.3
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.2e-27 126.3 76 80.3
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 2.0e-27 125.6 73 82.2
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 78.4
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 2.6e-27 125.2 83 71.1
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 81.1
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 2.6e-27 125.2 74 81.1
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 3.4e-27 124.8 75 77.3
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 3.4e-27 124.8 76 80.3
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 3.4e-27 124.8 76 80.3
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 3.4e-27 124.8 74 78.4
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 3.4e-27 124.8 75 78.7
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 3.4e-27 124.8 74 82.4
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 3.4e-27 124.8 84 76.2
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 4.4e-27 124.4 71 84.5
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 4.4e-27 124.4 76 78.9
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 5.8e-27 124.0 75 77.3
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 7.5e-27 123.6 73 78.1
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 9.9e-27 123.2 73 79.5
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 9.9e-27 123.2 73 83.6
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 1.3e-26 122.9 76 78.9
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.3e-26 122.9 71 84.5
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 1.7e-26 122.5 75 76.0
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 1.7e-26 122.5 75 77.3
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 1.7e-26 122.5 71 84.5
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 1.7e-26 122.5 74 82.4
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 2.9e-26 121.7 75 80.0
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 2.9e-26 121.7 74 77.0
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 2.9e-26 121.7 74 77.0
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 2.9e-26 121.7 74 77.0
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 2.9e-26 121.7 74 77.0
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 2.9e-26 121.7 74 77.0
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 2.9e-26 121.7 74 77.0
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 2.9e-26 121.7 74 77.0
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.9e-26 121.7 74 81.1
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.7e-26 121.3 74 79.7
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.7e-26 121.3 74 79.7
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.7e-26 121.3 74 79.7
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.7e-26 121.3 74 79.7
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.7e-26 121.3 74 79.7
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 6.4e-26 120.6 73 79.5
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 6.4e-26 120.6 73 79.5
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 6.4e-26 120.6 83 68.7
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 8.3e-26 120.2 71 78.9
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 8.3e-26 120.2 74 81.1
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 8.3e-26 120.2 75 77.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.1e-25 119.8 71 78.9
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.1e-25 119.8 76 76.3
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.4e-25 119.4 75 76.0
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 1.4e-25 119.4 82 68.3
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.9e-25 119.0 70 80.0
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.9e-25 119.0 84 69.0
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.9e-25 119.0 74 77.0
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 2.4e-25 118.6 75 76.0
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.2e-25 118.2 75 74.7
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 5.4e-25 117.5 81 71.6
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 7.1e-25 117.1 81 71.6
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 7.1e-25 117.1 70 78.6
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 9.2e-25 116.7 73 75.3
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 1.2e-24 116.3 75 76.0
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.2e-24 116.3 76 71.1
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.2e-24 116.3 76 73.7
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 1.6e-24 115.9 75 74.7
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.1e-24 115.5 73 74.0
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 4.6e-24 114.4 73 72.6
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 4.6e-24 114.4 73 71.2
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 4.6e-24 114.4 73 72.6
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 7.8e-24 113.6 74 70.3
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 7.8e-24 113.6 76 75.0
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.0e-23 113.2 72 73.6
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 1.0e-23 113.2 77 72.7
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.3e-23 112.8 71 73.2
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.3e-23 112.8 71 73.2
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.7e-23 112.5 73 75.3
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.3e-23 112.1 74 73.0
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 2.3e-23 112.1 71 77.5
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 3.0e-23 111.7 71 71.8
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.9e-23 111.3 71 74.6
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.9e-23 111.3 71 74.6
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 3.9e-23 111.3 76 71.1
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 6.6e-23 110.5 69 76.8
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 6.6e-23 110.5 73 75.3
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 8.6e-23 110.2 75 70.7
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 8.6e-23 110.2 75 70.7
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 1.5e-22 109.4 74 70.3
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 3.3e-22 108.2 76 71.1
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 4.3e-22 107.8 74 70.3
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 7.3e-22 107.1 79 69.6
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 1.2e-21 106.3 75 66.7
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 1.2e-21 106.3 74 74.3
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 2.8e-21 105.1 81 59.3
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 6.2e-21 104.0 72 68.1
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 1.1e-20 103.2 72 68.1
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.4e-20 102.8 82 62.2
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 1.8e-20 102.4 59 81.4
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 4.0e-20 101.3 70 72.9
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 4.0e-20 101.3 70 72.9
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 5.2e-20 100.9 73 69.9
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.2e-19 99.8 63 76.2
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 3.4e-19 98.2 72 65.3
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 3.8e-18 94.7 59 76.3
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 2.7e-16 88.6 84 53.6
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 7.8e-16 87.0 61 63.9
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 9.9e-11 70.1 69 49.3
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 2.4e-09 65.5 72 45.8
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 4.2e-09 64.7 78 47.4


User provided reference genes

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