Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.6e-126 455.3 216 100.0
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.7e-125 452.6 216 99.1
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 2.8e-120 435.3 216 94.4
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 5.0e-117 424.5 203 98.5
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.1e-111 406.8 194 97.9
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.8e-111 406.0 198 94.9
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 5.9e-110 401.0 216 89.8
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.3e-109 399.8 216 89.8
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.1e-108 396.7 216 88.9
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.9e-108 396.0 216 87.5
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.6e-107 392.9 216 87.0
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 6.1e-107 391.0 216 87.0
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.0e-106 390.2 216 88.0
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 1.8e-106 389.4 216 86.1
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 6.7e-106 387.5 216 86.1
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 6.7e-106 387.5 216 86.6
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 6.7e-106 387.5 216 87.0
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.5e-105 386.3 216 86.6
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 4.4e-105 384.8 214 86.0
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 5.7e-105 384.4 216 85.6
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 5.7e-105 384.4 216 85.6
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 5.7e-105 384.4 216 85.6
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 5.7e-105 384.4 217 86.6
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 7.4e-105 384.0 216 85.6
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 1.3e-104 383.3 216 86.1
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.7e-104 382.9 216 85.6
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 3.7e-104 381.7 220 85.0
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 6.3e-104 380.9 216 84.7
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 8.2e-104 380.6 216 85.2
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 1.1e-103 380.2 216 84.3
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.4e-103 379.8 215 84.2
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.4e-103 379.8 215 84.2
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.8e-103 379.4 216 84.3
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 2.4e-103 379.0 217 84.3
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 3.1e-103 378.6 216 83.3
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 3.1e-103 378.6 216 83.8
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 3.1e-103 378.6 216 83.8
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 4.1e-103 378.3 216 83.8
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 5.3e-103 377.9 216 83.8
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 5.3e-103 377.9 216 83.8
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 5.3e-103 377.9 238 78.6
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 9.1e-103 377.1 216 85.2
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.2e-102 376.7 220 84.1
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.6e-102 376.3 217 84.8
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 2.0e-102 375.9 216 82.4
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 2.6e-102 375.6 216 83.8
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 2.6e-102 375.6 216 82.4
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 5.9e-102 374.4 216 84.7
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 7.7e-102 374.0 216 82.4
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 7.7e-102 374.0 216 83.3
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.0e-101 373.6 217 82.0
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 1.7e-101 372.9 217 82.0
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 2.2e-101 372.5 218 82.1
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 2.9e-101 372.1 217 82.9
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 3.8e-101 371.7 216 83.8
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 5.0e-101 371.3 232 79.3
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 6.5e-101 370.9 203 86.2
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 1.9e-100 369.4 217 82.0
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.9e-100 369.4 217 82.0
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 2.5e-100 369.0 221 80.5
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 1.2e-99 366.7 216 81.0
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 3.6e-99 365.2 216 82.4
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 4.7e-99 364.8 200 84.5
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 6.1e-99 364.4 216 81.5
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 2.3e-98 362.5 216 81.9
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 5.2e-98 361.3 217 78.8
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 1.5e-97 359.8 220 80.0
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.5e-97 359.8 211 80.6
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 2.0e-97 359.4 186 89.8
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 7.5e-97 357.5 217 78.8
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.3e-96 356.7 220 78.2
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.7e-96 356.3 217 78.3
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 1.7e-96 356.3 217 77.9
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 2.2e-96 355.9 216 78.2
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 2.2e-96 355.9 217 78.3
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 3.7e-96 355.1 219 75.8
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 4.8e-96 354.8 217 77.9
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 4.8e-96 354.8 217 77.9
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 4.8e-96 354.8 199 82.4
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 2.4e-95 352.4 217 78.3
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 9.1e-95 350.5 217 77.4
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 9.1e-95 350.5 190 86.8
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.6e-94 349.7 219 74.4
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.0e-94 349.4 190 86.3
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 2.0e-94 349.4 186 87.6
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.0e-93 347.1 177 89.8
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 1.7e-93 346.3 217 76.5
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.7e-93 346.3 180 88.9
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 6.5e-93 344.4 216 74.5
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.1e-92 343.6 216 78.7
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 3.2e-92 342.0 197 84.3
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 4.2e-92 341.7 189 85.7
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 1.6e-91 339.7 212 76.4
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 3.6e-91 338.6 215 74.9
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 6.1e-91 337.8 242 71.1
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 5.2e-90 334.7 206 77.7
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 3.4e-89 332.0 189 83.1
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 7.5e-89 330.9 190 84.2
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.6e-86 323.2 196 73.0
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 3.8e-85 318.5 192 77.1
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 4.0e-82 308.5 215 65.1
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 3.4e-81 305.4 203 72.4
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 4.4e-81 305.1 196 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 1.5e-76 290.0 196 66.8
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 4.7e-75 285.0 145 91.0
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 7.5e-73 277.7 172 78.5
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 7.5e-73 277.7 172 78.5
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 4.6e-70 268.5 199 62.8
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 4.6e-70 268.5 145 84.1
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.9e-68 263.1 133 91.0
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 3.3e-68 262.3 133 91.0
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 2.2e-64 249.6 133 86.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.5e-60 236.1 121 87.6
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.6e-59 233.4 144 78.5
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.1e-59 233.0 130 82.3
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.8e-51 206.1 126 80.2
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 6.2e-43 178.3 89 94.4
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 8.9e-42 174.5 107 80.4
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.1e-39 167.5 97 83.5
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 2.1e-30 136.7 87 78.2
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 2.4e-26 123.2 83 73.5
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 3.8e-24 115.9 209 35.9
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 4.9e-24 115.5 208 34.1
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 1.4e-18 97.4 64 73.4
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 1.0e-13 81.3 40 90.0
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 1.9e-12 77.0 64 60.9
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 7.6e-09 65.1 41 65.9


User provided reference genes

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