Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2874 Fragaria x ananassa HOM05D017088 ORTHO05D012721 1.1e-134 483.4 254 100.0
FAN05G3157 Fragaria x ananassa HOM05D017088 ORTHO05D012721 8.7e-105 384.0 218 93.6
FvH4_6g41370 Fragaria vesca HOM05D017088 ORTHO05D012721 1.1e-99 367.1 218 90.8
FAN14G5034 Fragaria x ananassa HOM05D017088 ORTHO05D012721 4.6e-98 361.7 218 89.9
RcHm_v2.0_Chr2g0156911 Rosa chinensis HOM05D017088 ORTHO05D012721 2.9e-76 289.3 178 85.4
FAN09G4455 Fragaria x ananassa HOM05D017088 ORTHO05D012721 1.1e-54 217.6 134 91.0
FAN09G1363 Fragaria x ananassa HOM05D017088 ORTHO05D012721 3.0e-20 103.2 54 94.4
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.1e-17 93.2 186 34.4
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 9.0e-17 91.7 155 34.2
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.3e-15 87.8 185 31.9
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.3e-15 87.8 185 31.9
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.7e-15 87.4 154 33.1
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.8e-15 86.3 188 31.9
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 4.9e-15 85.9 181 32.6
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 4.9e-15 85.9 191 33.5
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.9e-14 84.0 188 30.9
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 2.4e-14 83.6 182 31.9
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 5.4e-14 82.4 184 30.4
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 5.4e-14 82.4 188 30.9
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 5.4e-14 82.4 192 31.2
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 7.1e-14 82.0 188 30.3
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 9.3e-14 81.6 184 31.0
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.6e-13 80.9 184 31.0
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.6e-13 80.9 184 31.0
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 1.6e-13 80.9 188 30.9
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.6e-13 80.9 185 31.4
TAR636G0890 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.6e-13 80.9 154 33.1
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 2.1e-13 80.5 152 29.6
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 2.1e-13 80.5 188 30.3
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 2.1e-13 80.5 152 29.6
TAR636G1837 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.1e-13 80.5 154 32.5
Manes.01G175800 Manihot esculenta HOM05D017088 ORTHO05D029635 2.7e-13 80.1 156 34.6
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 2.7e-13 80.1 152 30.3
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 1.8e-12 77.4 179 31.8
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 1.8e-12 77.4 177 29.9
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 8.7e-12 75.1 184 32.6
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 4.3e-11 72.8 153 34.6
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 5.6e-11 72.4 175 28.0
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 5.6e-11 72.4 180 27.8
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 7.4e-11 72.0 181 29.3
Migut.N02460 Erythranthe guttata HOM05D002687 ORTHO05D002052 2.1e-10 70.5 196 30.1
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 2.1e-10 70.5 178 29.2
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.8e-10 70.1 212 28.3
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 3.6e-10 69.7 216 26.9
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 3.6e-10 69.7 195 30.3
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.2e-10 68.9 171 29.2
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 1.1e-09 68.2 178 29.8
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 1.1e-09 68.2 179 27.4
CSS0036580 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.4e-09 67.8 188 27.7
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 1.8e-09 67.4 187 29.4
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 2.4e-09 67.0 178 30.3
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 2.4e-09 67.0 180 27.2
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 3.1e-09 66.6 187 26.7
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 3.1e-09 66.6 185 29.2
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 4.0e-09 66.2 182 27.5
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 4.0e-09 66.2 186 26.3
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 5.3e-09 65.9 174 29.3
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 5.3e-09 65.9 193 29.0
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 6.9e-09 65.5 186 27.4
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 9.0e-09 65.1 207 28.0
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 1.2e-08 64.7 194 30.4
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.5e-08 64.3 196 27.0
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 1.5e-08 64.3 197 29.4
MD12G1038800 Malus domestica HOM05D002687 ORTHO05D002052 2.0e-08 63.9 192 28.1
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 4.5e-08 62.8 186 26.3
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.5e-08 62.8 195 27.7
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 5.8e-08 62.4 187 27.8
Dinv31534 Davidia involucrata HOM05D002687 ORTHO05D002052 7.6e-08 62.0 163 30.7
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 9.9e-08 61.6 158 29.1
FAN14G3199 Fragaria x ananassa HOM05D029328 ORTHO05D002052 9.9e-08 61.6 158 29.1
Potri.009G019800 Populus trichocarpa HOM05D002687 ORTHO05D002052 9.9e-08 61.6 187 31.0
VMungo1080G0268 Vigna mungo HOM05D002687 ORTHO05D002052 1.3e-07 61.2 196 23.0
CDE12G0475 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 2.2e-07 60.5 187 27.8
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 4.9e-07 59.3 190 30.0
Lj1A303T25 Lonicera japonica HOM05D037926 ORTHO05D012721 8.4e-07 58.5 190 26.3
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 1.4e-06 57.8 187 28.3
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.9e-06 57.4 185 25.9
QL03p000138 Quercus lobata HOM05D002687 ORTHO05D002052 2.4e-06 57.0 181 27.1
Hma1.2p1_0388F.1_g142370 Hydrangea macrophylla HOM05D002137 ORTHO05D002144 3.2e-06 56.6 154 26.6
CiPaw.04G111600 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.2e-06 56.2 209 26.8
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 7.1e-06 55.5 191 24.6
Potri.009G003800 Populus trichocarpa HOM05D000980 ORTHO05D000649 7.1e-06 55.5 138 28.3


User provided reference genes

Program Settings