Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.5e-202 708.8 408 100.0
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.9e-192 673.7 406 96.6
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.4e-189 666.4 405 95.3
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 2.7e-188 662.1 416 90.9
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 9.6e-162 573.9 413 82.1
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.3e-142 510.4 332 89.8
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 6.3e-97 358.6 428 57.9
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 2.5e-85 320.1 421 53.9
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 5.7e-82 308.9 420 48.3
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 8.3e-57 225.3 425 39.8
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 6.2e-52 209.1 411 39.9
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 1.7e-49 201.1 412 37.9
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.7e-46 191.0 419 36.3
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 5.6e-45 186.0 421 36.6
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 2.8e-44 183.7 430 36.3
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 1.4e-43 181.4 432 35.0
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 4.0e-43 179.9 422 37.2
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 5.3e-43 179.5 421 36.8
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 9.9e-42 175.3 423 35.2
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 7.1e-40 169.1 427 35.6
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.2e-39 168.3 436 35.3
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 3.6e-36 156.8 410 33.9
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.1e-35 155.2 411 38.2
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 2.4e-35 154.1 415 32.0
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 4.0e-35 153.3 418 34.0
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 9.0e-35 152.1 422 32.2
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 7.6e-34 149.1 438 32.4
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 9.9e-34 148.7 418 34.7
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 2.9e-33 147.1 428 32.9
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 8.4e-33 145.6 416 32.7
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.7e-31 140.6 463 31.3
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 7.9e-31 139.0 413 34.4
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 1.3e-30 138.3 432 32.4
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.3e-30 138.3 418 34.0
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.8e-30 137.9 416 33.4
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.8e-30 137.9 420 37.4
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.1e-30 136.3 428 31.3
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 6.7e-30 136.0 427 36.3
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 2.5e-29 134.0 377 35.5
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.1e-28 131.0 410 33.2
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.8e-28 130.6 422 32.5
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 2.8e-28 130.6 414 32.1
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.4e-27 128.3 410 33.2
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 2.4e-27 127.5 438 31.5
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 4.0e-27 126.7 411 30.9
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 5.3e-27 126.3 420 32.4
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 5.3e-27 126.3 424 31.1
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 6.9e-27 125.9 438 34.0
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 9.0e-27 125.6 438 34.0
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 9.0e-27 125.6 410 32.2
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 3.4e-26 123.6 441 34.7
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 4.5e-26 123.2 415 31.8
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 7.6e-26 122.5 405 29.4
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.0e-25 122.1 434 29.7
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 1.0e-25 122.1 424 29.7
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 1.0e-25 122.1 428 31.8
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 1.0e-25 122.1 424 30.2
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.8e-25 120.2 415 31.8
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 2.5e-24 117.5 420 33.8
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.5e-24 117.5 429 33.3
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.2e-24 116.7 409 30.3
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 5.5e-24 116.3 335 33.1
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 5.5e-24 116.3 357 31.1
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.7e-23 114.0 220 42.7
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 4.6e-23 113.2 435 29.9
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 3.0e-22 110.5 431 30.2
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 8.7e-22 109.0 137 46.7
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.5e-21 108.2 432 26.9
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.9e-21 107.8 433 29.1
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.5e-21 107.5 432 27.1
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.5e-21 107.5 432 27.5
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 2.5e-21 107.5 416 32.0
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 3.3e-21 107.1 424 31.1
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 4.3e-21 106.7 427 30.2
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 4.3e-21 106.7 434 32.3
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 5.7e-21 106.3 416 29.6
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 9.6e-21 105.5 421 29.5
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 9.6e-21 105.5 423 34.5
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.1e-20 104.4 408 25.7
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 2.8e-20 104.0 171 39.2
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 8.2e-20 102.4 407 29.7
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.4e-19 101.7 448 27.0
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.8e-19 101.3 167 41.3
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.8e-19 101.3 167 41.3
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 5.3e-19 99.8 163 41.7
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 5.3e-19 99.8 405 26.2
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 9.0e-19 99.0 421 27.8
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 9.0e-19 99.0 414 26.3
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 9.0e-19 99.0 420 28.8
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 4.5e-18 96.7 162 40.1
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 1.3e-17 95.1 437 27.7
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 3.8e-17 93.6 133 45.1
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 5.0e-17 93.2 416 27.4
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 1.4e-16 91.7 436 27.1
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.9e-16 91.3 421 28.0
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 1.9e-16 91.3 267 31.1
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 2.5e-16 90.9 406 26.8
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.2e-16 90.5 351 29.6
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 5.5e-16 89.7 428 27.1
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 5.5e-16 89.7 444 29.3
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.2e-15 88.6 351 29.3
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 2.1e-15 87.8 404 28.7
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.7e-15 87.4 413 26.9
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.5e-15 87.0 416 28.4
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 4.6e-15 86.7 414 26.1
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 1.8e-14 84.7 433 26.1
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.8e-14 84.7 412 27.2
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 1.8e-14 84.7 433 28.9
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 1.8e-14 84.7 414 27.3
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.3e-14 84.3 407 25.8
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.3e-14 84.3 412 25.7
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 3.0e-14 84.0 402 28.4
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.9e-14 83.6 412 26.9
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 6.7e-14 82.8 422 27.0
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 8.7e-14 82.4 424 28.5
Thhalv10016075m.g Eutrema salsugineum HOM05D013727 ORTHO05D003520 8.7e-14 82.4 448 27.2
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.5e-13 81.6 429 26.8
AT5G01370 Arabidopsis thaliana HOM05D013727 ORTHO05D003520 2.5e-13 80.9 448 27.2
Carub.0006s0045 Capsella rubella HOM05D013727 ORTHO05D003520 2.5e-13 80.9 448 30.4
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 3.3e-13 80.5 181 34.8
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 5.7e-13 79.7 406 28.6
arahy.Tifrunner.gnm1.ann1.71KX3G Arachis hypogaea HOM05D003726 ORTHO05D003520 7.4e-13 79.3 135 36.3
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 7.4e-13 79.3 399 24.1
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 9.7e-13 79.0 185 34.1
BolC2t06018H Brassica oleracea HOM05D013727 ORTHO05D003520 1.3e-12 78.6 449 31.2
CARHR211750 Cardamine hirsuta HOM05D013727 ORTHO05D003520 1.3e-12 78.6 449 29.4
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 1.3e-12 78.6 424 25.9
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 1.6e-12 78.2 407 26.5
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.6e-12 78.2 377 25.2
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.8e-12 77.4 406 28.3
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.8e-12 77.4 412 26.5
AUR62030799 Chenopodium quinoa HOM05D029928 ORTHO05D003520 3.7e-12 77.0 247 33.6
arahy.Tifrunner.gnm1.ann1.142K7L Arachis hypogaea HOM05D003726 ORTHO05D003520 4.8e-12 76.6 135 34.8
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 6.3e-12 76.3 418 25.4
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.1e-11 75.5 415 24.8
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 1.1e-11 75.5 407 29.0
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 2.4e-11 74.3 440 31.6
Aa31LG1G23030 Aethionema arabicum HOM05D013727 ORTHO05D003520 3.1e-11 73.9 437 28.8
arahy.Tifrunner.gnm1.ann1.W084UE Arachis hypogaea HOM05D003726 ORTHO05D003520 3.1e-11 73.9 381 25.5
AL6G10750 Arabidopsis lyrata HOM05D013727 ORTHO05D003520 5.3e-11 73.2 446 26.0
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 9.0e-11 72.4 161 34.8
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 9.0e-11 72.4 422 24.9
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 1.2e-10 72.0 409 24.7
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 1.2e-10 72.0 372 29.8
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.2e-10 72.0 431 27.6
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 1.5e-10 71.6 162 30.9
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 3.4e-10 70.5 414 28.5
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 7.7e-10 69.3 417 22.1
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 1.0e-09 68.9 420 26.2
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.0e-09 68.9 166 33.7
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 1.3e-09 68.6 416 24.5
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.7e-09 68.2 427 23.4
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 2.2e-09 67.8 406 24.4
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 2.9e-09 67.4 417 24.9
Hund11000 Selenicereus undatus HOM05D046068 ORTHO05D003520 5.0e-09 66.6 182 30.8
Hund29902 Selenicereus undatus HOM05D046068 ORTHO05D003520 1.9e-08 64.7 178 29.2
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 2.5e-08 64.3 422 23.0
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 4.2e-08 63.5 436 24.3
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 5.5e-08 63.2 414 24.9
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 7.2e-08 62.8 137 32.1
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 9.4e-08 62.4 303 27.1
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 1.6e-07 61.6 146 29.5
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 1.4e-06 58.5 415 24.3
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 1.8e-06 58.2 421 24.0
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.8e-06 58.2 428 25.7
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 2.3e-06 57.8 165 29.7
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 3.9e-06 57.0 165 29.7
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 3.9e-06 57.0 422 22.0
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 8.8e-06 55.8 418 25.4


User provided reference genes

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