Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.9e-60 235.7 124 100.0
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 6.7e-58 227.3 123 95.9
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 6.7e-58 227.3 124 96.0
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.1e-57 226.5 122 96.7
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.8e-55 219.2 124 92.7
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 6.3e-48 194.1 124 87.9
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 1.9e-20 102.8 116 59.5
MD09G1064600 Malus domestica HOM05D007413 ORTHO05D009357 2.7e-19 99.0 117 58.1
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 5.4e-15 84.7 118 50.0
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 2.7e-14 82.4 124 46.8
CiPaw.03G089400 Carya illinoinensis HOM05D007413 ORTHO05D009357 5.9e-14 81.3 100 53.0
Cfa007655 Carpinus fangiana HOM05D007413 ORTHO05D009357 1.7e-13 79.7 113 54.0
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 2.9e-13 79.0 110 45.5
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 6.5e-13 77.8 116 50.9
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 1.9e-12 76.3 120 42.5
Sabra17G0082000 Salix brachista HOM05D007413 ORTHO05D009357 1.9e-12 76.3 119 47.1
Manes.01G097200 Manihot esculenta HOM05D007413 ORTHO05D009357 2.5e-12 75.9 130 45.4
Manes.02G054200 Manihot esculenta HOM05D007413 ORTHO05D009357 2.5e-12 75.9 99 48.5
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 3.2e-12 75.5 110 44.5
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 4.2e-12 75.1 76 53.9
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 4.2e-12 75.1 66 65.2
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 7.2e-12 74.3 111 48.6
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 9.4e-12 73.9 71 54.9
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 1.2e-11 73.6 84 52.4
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 1.2e-11 73.6 99 44.4
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 1.2e-11 73.6 109 44.0
ClCG07G007410 Citrullus lanatus HOM05D007413 ORTHO05D009357 1.6e-11 73.2 106 47.2
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 2.1e-11 72.8 112 42.0
Aqoxy3G03598 Aquilegia oxysepala HOM05D007413 ORTHO05D009357 2.7e-11 72.4 106 43.4
Duzib147G0133 Durio zibethinus HOM05D007413 ORTHO05D009357 6.1e-11 71.2 75 49.3
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 6.1e-11 71.2 104 46.2
Nn3g17420 Nelumbo nucifera HOM05D007413 ORTHO05D009357 8.0e-11 70.9 114 43.0
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 1.4e-10 70.1 68 54.4
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 1.4e-10 70.1 89 47.2
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 1.8e-10 69.7 67 52.2
MELO3C022028.2 Cucumis melo HOM05D007413 ORTHO05D009357 3.0e-10 68.9 110 45.5
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 3.0e-10 68.9 120 45.0
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 3.0e-10 68.9 59 59.3
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 3.0e-10 68.9 59 59.3
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 4.0e-10 68.6 56 64.3
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 6.8e-10 67.8 118 44.9
MELO3C024851.2 Cucumis melo HOM05D007413 ORTHO05D009357 6.8e-10 67.8 74 47.3
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 6.8e-10 67.8 87 44.8
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 8.8e-10 67.4 122 41.0
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 1.2e-09 67.0 68 50.0
SalBow1G0329 Salvia bowleyana HOM05D007413 ORTHO05D009357 1.5e-09 66.6 62 56.5
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 2.0e-09 66.2 60 56.7
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 2.6e-09 65.9 97 42.3
Psat1g067640 Pisum sativum HOM05D007413 ORTHO05D009357 3.4e-09 65.5 64 53.1
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 4.4e-09 65.1 109 40.4
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 4.4e-09 65.1 65 55.4
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 4.4e-09 65.1 65 55.4
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 4.4e-09 65.1 63 49.2
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 5.7e-09 64.7 102 41.2
Carub.0007s3668 Capsella rubella HOM05D007413 ORTHO05D009357 5.7e-09 64.7 111 37.8
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 5.7e-09 64.7 73 53.4
Medtr6g015150 Medicago truncatula HOM05D007413 ORTHO05D009357 7.5e-09 64.3 57 56.1
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 9.8e-09 63.9 81 48.1
Nn4g23392 Nelumbo nucifera HOM05D007413 ORTHO05D009357 1.7e-08 63.2 114 39.5
Lsat_1_v5_gn_4_171221 Lactuca sativa HOM05D007413 ORTHO05D009357 2.2e-08 62.8 58 62.1
Oeu010247.1 Olea europaea HOM05D007413 ORTHO05D009357 2.2e-08 62.8 62 51.6
AT5G39240 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 2.8e-08 62.4 114 41.2
CAN.G398.10 Capsicum annuum HOM05D007413 ORTHO05D009357 2.8e-08 62.4 63 50.8
Migut.K01283 Erythranthe guttata HOM05D007413 ORTHO05D009357 2.8e-08 62.4 104 44.2
unitig_62.g23378 Utricularia gibba HOM05D007413 ORTHO05D009357 4.9e-08 61.6 63 50.8
Sed0019528 Sechium edule HOM05D007413 ORTHO05D009357 8.3e-08 60.8 98 39.8
TWI34G0597 Tripterygium wilfordii HOM05D007413 ORTHO05D009357 8.3e-08 60.8 125 38.4
Carub.0005s0809 Capsella rubella HOM05D007413 ORTHO05D009357 1.1e-07 60.5 105 41.0
Gohir.D04G043900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 1.1e-07 60.5 107 39.3
Gorai.012G049200 Gossypium raimondii HOM05D007413 ORTHO05D009357 1.1e-07 60.5 108 38.9
CSS0018963 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.4e-07 60.1 111 41.4
Migut.H00635 Erythranthe guttata HOM05D007413 ORTHO05D009357 1.8e-07 59.7 106 41.5
Gohir.A05G371900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 1.8e-07 59.7 108 38.9
BcaB06g27281 Brassica carinata HOM05D007413 ORTHO05D009357 2.4e-07 59.3 117 37.6
CARHR263170 Cardamine hirsuta HOM05D007413 ORTHO05D009357 3.1e-07 58.9 74 44.6
Nitab4.5_0005916g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 4.1e-07 58.5 50 62.0
Sc14g0006230 Simmondsia chinensis HOM05D007413 ORTHO05D009357 4.1e-07 58.5 58 46.6
Sopen02g016170 Solanum pennellii HOM05D007413 ORTHO05D009357 4.1e-07 58.5 61 49.2
Lalb_Chr21g0318381 Lupinus albus HOM05D007413 ORTHO05D009357 9.2e-07 57.4 70 47.1
SGA_v2.0_scaffold52G19169 Striga asiatica HOM05D007413 ORTHO05D009357 9.2e-07 57.4 116 38.8
BcaC02g09685 Brassica carinata HOM05D007413 ORTHO05D009357 1.2e-06 57.0 117 35.9
C04p45600 Brassica napus HOM05D007413 ORTHO05D009357 1.2e-06 57.0 117 35.9
BolC4t26142H Brassica oleracea HOM05D007413 ORTHO05D009357 1.2e-06 57.0 117 35.9
Lalb_Chr02g0158971 Lupinus albus HOM05D007413 ORTHO05D009357 1.2e-06 57.0 93 45.2
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 1.6e-06 56.6 89 39.3
ATR0064G025 Amborella trichopoda HOM05D007413 ORTHO05D009357 2.0e-06 56.2 94 40.4
A04p11950 Brassica napus HOM05D007413 ORTHO05D009357 2.7e-06 55.8 111 35.1
BraA04t16860Z Brassica rapa HOM05D007413 ORTHO05D009357 2.7e-06 55.8 111 35.1
DCAR_011043 Daucus carota HOM05D007413 ORTHO05D009357 2.7e-06 55.8 94 39.4
Solyc02g066970.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 3.5e-06 55.5 96 39.6
CDE10G0699 Ceratophyllum demersum HOM05D007413 ORTHO05D009357 5.9e-06 54.7 59 47.5
Actinidia26249 Actinidia chinensis HOM05D007413 ORTHO05D009357 7.7e-06 54.3 93 45.2
Aa31LG9G16690 Aethionema arabicum HOM05D007413 ORTHO05D009357 7.7e-06 54.3 57 50.9


User provided reference genes

Program Settings