Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.0e-71 272.3 134 100.0
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.7e-52 208.8 116 93.1
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.2e-33 146.7 72 97.2
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 6.2e-25 117.9 100 66.0
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 1.9e-18 96.3 50 90.0
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 5.6e-18 94.7 50 88.0
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.5e-18 94.0 50 88.0
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.5e-18 94.0 50 88.0
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 5.2e-16 88.2 50 82.0
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 3.4e-15 85.5 50 78.0
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 7.6e-15 84.3 48 79.2
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 9.9e-15 84.0 47 80.9
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 1.7e-14 83.2 50 76.0
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 2.2e-14 82.8 50 76.0
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 2.2e-14 82.8 50 76.0
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 3.7e-14 82.0 47 78.7
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 6.4e-14 81.3 47 78.7
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 1.1e-13 80.5 60 68.3
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 1.1e-13 80.5 66 60.6
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.4e-13 80.1 50 72.0
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 1.4e-13 80.1 53 66.0
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 1.4e-13 80.1 46 76.1
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.9e-13 79.7 46 76.1
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 2.4e-13 79.3 47 74.5
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 3.2e-13 79.0 48 75.0
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 4.1e-13 78.6 44 77.3
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 4.1e-13 78.6 54 64.8
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 4.1e-13 78.6 73 56.2
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 4.1e-13 78.6 73 56.2
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 4.1e-13 78.6 44 77.3
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 5.4e-13 78.2 52 69.2
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 7.1e-13 77.8 50 70.0
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 7.1e-13 77.8 47 72.3
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 7.1e-13 77.8 47 72.3
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 9.2e-13 77.4 43 79.1
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 9.2e-13 77.4 55 67.3
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 9.2e-13 77.4 48 72.9
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.2e-12 77.0 44 75.0
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.6e-12 76.6 73 56.2
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.6e-12 76.6 73 56.2
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 1.6e-12 76.6 47 74.5
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 2.1e-12 76.3 47 74.5
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 2.1e-12 76.3 47 72.3
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 2.7e-12 75.9 47 74.5
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 2.7e-12 75.9 47 70.2
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 2.7e-12 75.9 66 56.1
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 3.5e-12 75.5 67 53.7
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 3.5e-12 75.5 49 67.3
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 3.5e-12 75.5 50 70.0
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 4.6e-12 75.1 50 66.0
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 4.6e-12 75.1 49 71.4
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 4.6e-12 75.1 47 70.2
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 4.6e-12 75.1 47 70.2
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 4.6e-12 75.1 44 72.7
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 6.0e-12 74.7 44 72.7
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 6.0e-12 74.7 44 72.7
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 6.0e-12 74.7 48 70.8
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 6.0e-12 74.7 47 68.1
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 6.0e-12 74.7 52 67.3
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 6.0e-12 74.7 47 74.5
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 7.8e-12 74.3 47 74.5
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 7.8e-12 74.3 47 74.5
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 7.8e-12 74.3 46 71.7
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 1.0e-11 73.9 44 72.7
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.0e-11 73.9 54 66.7
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.7e-11 73.2 44 72.7
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.7e-11 73.2 50 68.0
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 2.3e-11 72.8 47 70.2
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 2.3e-11 72.8 46 69.6
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 3.0e-11 72.4 42 76.2
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 3.9e-11 72.0 73 49.3
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 3.9e-11 72.0 73 49.3
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 5.1e-11 71.6 47 66.0
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 6.6e-11 71.2 44 70.5
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 6.6e-11 71.2 42 73.8
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 6.6e-11 71.2 73 49.3
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 1.1e-10 70.5 50 64.0
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.1e-10 70.5 53 60.4
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 1.5e-10 70.1 46 65.2
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.5e-10 70.1 66 51.5
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 1.5e-10 70.1 47 70.2
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 1.9e-10 69.7 46 63.0
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.9e-10 69.7 46 63.0
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 1.9e-10 69.7 46 63.0
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 1.9e-10 69.7 47 68.1
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 3.3e-10 68.9 52 63.5
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 3.3e-10 68.9 46 63.0
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 4.3e-10 68.6 52 59.6
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 4.3e-10 68.6 46 63.0
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 5.6e-10 68.2 84 46.4
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 7.3e-10 67.8 84 46.4
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 7.3e-10 67.8 79 46.8
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 7.3e-10 67.8 44 70.5
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 9.6e-10 67.4 46 60.9
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 9.6e-10 67.4 46 65.2
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 1.2e-09 67.0 84 46.4
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.6e-09 66.6 47 63.8
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 2.8e-09 65.9 50 62.0
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 4.7e-09 65.1 46 60.9
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 6.2e-09 64.7 50 60.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 6.8e-08 61.2 44 56.8
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 6.8e-08 61.2 43 62.8
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.2e-06 56.2 47 55.3
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.2e-06 56.2 47 55.3


User provided reference genes

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