Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.4e-229 799.3 419 100.0
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.2e-213 745.0 472 86.2
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.4e-211 739.6 472 85.6
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.7e-209 732.6 472 85.4
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 4.8e-209 731.1 472 85.2
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 6.5e-206 720.7 472 82.8
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 2.9e-182 642.1 472 73.7
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 1.0e-174 617.1 472 71.8
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 9.8e-170 600.5 473 68.9
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 2.9e-169 599.0 465 70.1
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.5e-167 592.0 471 68.2
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 5.0e-166 588.2 546 61.5
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 5.6e-165 584.7 473 67.2
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 6.2e-164 581.3 462 67.5
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 1.4e-163 580.1 471 67.1
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 2.3e-163 579.3 473 66.0
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 6.8e-163 577.8 473 66.2
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 3.4e-162 575.5 464 67.5
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 7.5e-162 574.3 503 63.6
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 2.9e-161 572.4 473 65.5
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 8.3e-161 570.9 468 65.6
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 3.2e-160 568.9 468 67.3
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 3.2e-160 568.9 472 65.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 7.0e-160 567.8 473 66.2
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 7.0e-160 567.8 473 64.7
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 1.6e-159 566.6 473 66.2
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 3.5e-159 565.5 581 57.1
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 4.6e-159 565.1 473 66.0
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 6.6e-158 561.2 473 64.9
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 1.6e-156 556.6 468 65.0
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 2.8e-156 555.8 473 64.1
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 1.1e-155 553.9 473 63.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 5.2e-155 551.6 472 62.9
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 6.8e-155 551.2 471 63.3
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.5e-154 550.1 469 64.2
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.5e-154 550.1 468 63.2
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 2.0e-154 549.7 468 65.2
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 3.4e-154 548.9 470 64.3
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 5.8e-154 548.1 473 63.0
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 1.7e-153 546.6 471 64.3
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.7e-153 546.6 470 63.4
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 2.9e-153 545.8 468 63.2
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 6.4e-153 544.7 470 63.6
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.1e-152 543.9 468 63.0
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 1.9e-152 543.1 469 63.8
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 2.4e-152 542.7 464 65.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.4e-152 542.7 471 62.0
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 4.1e-152 542.0 468 62.8
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 4.6e-151 538.5 473 64.1
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 5.6e-149 531.6 468 63.0
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 3.6e-148 528.9 473 61.3
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 4.7e-148 528.5 460 62.6
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 1.8e-147 526.6 468 62.8
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 2.1e-143 513.1 460 62.2
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 1.0e-142 510.8 470 59.4
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 4.3e-141 505.4 476 61.8
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 3.6e-140 502.3 508 56.3
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.1e-139 500.7 432 62.7
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 3.1e-139 499.2 465 59.1
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 4.0e-139 498.8 465 58.9
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 6.9e-139 498.0 433 61.0
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 9.0e-139 497.7 469 59.5
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 2.6e-138 496.1 471 58.0
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 3.4e-138 495.7 466 57.5
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 7.6e-138 494.6 465 58.3
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.3e-137 493.8 386 67.9
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 2.2e-137 493.0 465 58.1
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 3.8e-137 492.3 465 58.3
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 4.9e-137 491.9 465 58.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 4.2e-136 488.8 465 57.8
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 4.2e-136 488.8 465 57.4
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 5.4e-136 488.4 472 57.6
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 9.3e-136 487.6 465 57.6
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 9.3e-136 487.6 396 67.7
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 4.6e-135 485.3 465 57.8
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 1.3e-134 483.8 463 56.8
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.7e-134 483.4 470 56.4
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 1.7e-134 483.4 423 62.6
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 2.3e-134 483.0 465 56.8
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 3.0e-134 482.6 465 57.6
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 7.3e-133 478.0 462 57.4
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 3.6e-132 475.7 473 55.8
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 1.4e-131 473.8 472 57.6
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.5e-130 470.3 520 53.7
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 9.9e-130 467.6 419 61.6
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 2.2e-129 466.5 472 54.9
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 5.4e-128 461.8 436 58.5
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-125 453.8 462 54.5
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 1.6e-124 450.3 440 55.9
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 2.4e-123 446.4 464 54.5
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 2.4e-123 446.4 464 54.5
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 7.1e-120 434.9 437 53.8
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.4e-107 394.0 449 54.1
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.8e-107 393.7 473 49.7
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 9.0e-107 391.3 447 54.1
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 1.6e-103 380.6 307 67.4
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 2.2e-97 360.1 554 42.6
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 4.8e-92 342.4 250 74.8
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 6.3e-92 342.0 317 60.9
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 2.6e-90 336.7 690 36.7
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.7e-89 334.0 313 59.4
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 3.6e-87 326.2 275 64.7
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 4.1e-83 312.8 284 61.3
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.1e-75 286.6 244 63.9
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.1e-71 273.9 476 38.4
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 3.4e-69 266.5 228 63.2
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 9.8e-69 265.0 280 53.2
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 6.5e-65 252.3 455 37.4
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 8.9e-62 241.9 463 37.1
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 2.8e-60 236.9 477 35.0
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 8.3e-60 235.3 462 35.7
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.4e-59 234.6 149 77.9
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 4.0e-54 216.5 151 71.5
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 6.4e-52 209.1 192 57.8
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 3.2e-51 206.8 152 67.1
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 2.0e-50 204.1 221 52.9
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.4e-46 191.4 135 73.3
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.1e-34 151.0 103 69.9
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 2.2e-28 131.0 96 63.5
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.1e-27 128.6 483 28.4
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.6e-23 114.8 112 57.1
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.3e-20 105.1 93 66.7
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 4.2e-19 100.1 143 43.4
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.5e-16 90.9 84 57.1
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 2.6e-13 80.9 66 69.7
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.1e-11 75.5 112 41.1
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 4.2e-11 73.6 123 38.2
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 9.3e-11 72.4 102 48.0
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.8e-09 68.2 67 47.8
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 8.7e-09 65.9 36 91.7


User provided reference genes

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