Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 4.6e-108 395.2 309 100.0
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 3.1e-88 329.3 309 79.3
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 5.0e-86 322.0 314 75.5
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 3.6e-84 315.8 309 78.3
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 4.5e-71 272.3 317 73.2
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 2.2e-62 243.4 302 59.3
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 1.2e-55 221.1 310 61.9
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 9.4e-53 211.5 314 58.3
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 5.2e-51 205.7 300 50.7
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 7.0e-48 195.3 304 52.6
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.8e-46 189.5 331 48.9
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 2.5e-45 186.8 313 57.5
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 9.5e-45 184.9 304 54.3
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 9.5e-45 184.9 300 61.7
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 2.8e-44 183.3 310 55.5
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.6e-44 183.0 309 49.8
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 3.6e-44 183.0 301 51.5
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 4.7e-44 182.6 320 60.0
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 4.7e-44 182.6 314 51.6
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 6.1e-44 182.2 301 64.8
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 1.4e-43 181.0 338 55.9
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 1.4e-43 181.0 303 62.7
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 1.8e-43 180.6 312 52.2
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 3.0e-43 179.9 307 51.1
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 4.0e-43 179.5 315 45.7
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 5.2e-43 179.1 332 59.9
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 6.8e-43 178.7 306 47.7
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 1.5e-42 177.6 315 46.7
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 2.0e-42 177.2 119 71.4
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.0e-42 177.2 300 54.7
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.6e-42 176.8 121 69.4
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 7.5e-42 175.3 303 48.5
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 9.8e-42 174.9 307 48.2
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.3e-41 174.5 304 49.7
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 1.3e-41 174.5 119 69.7
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 1.7e-41 174.1 117 68.4
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 1.7e-41 174.1 318 56.6
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 1.7e-41 174.1 315 54.0
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.7e-41 174.1 121 67.8
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 2.9e-41 173.3 121 66.9
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 2.9e-41 173.3 309 65.0
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 4.9e-41 172.6 305 47.2
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 4.9e-41 172.6 315 55.9
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 8.3e-41 171.8 327 40.7
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 3.2e-40 169.9 306 47.1
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 5.4e-40 169.1 124 66.9
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 2.0e-39 167.2 115 70.4
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 2.7e-39 166.8 120 68.3
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.7e-39 166.8 113 69.0
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 3.5e-39 166.4 120 66.7
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 4.6e-39 166.0 123 65.0
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 5.9e-39 165.6 121 65.3
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 5.9e-39 165.6 318 52.8
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 5.9e-39 165.6 304 61.5
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 7.8e-39 165.2 310 45.8
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 7.8e-39 165.2 120 64.2
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 7.8e-39 165.2 113 69.9
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 1.0e-38 164.9 121 69.4
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.0e-38 164.9 123 65.0
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 1.3e-38 164.5 312 59.3
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 1.7e-38 164.1 336 62.5
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 2.3e-38 163.7 121 65.3
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 3.0e-38 163.3 121 64.5
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 3.9e-38 162.9 119 69.7
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 3.9e-38 162.9 114 67.5
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 6.6e-38 162.2 123 64.2
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 8.6e-38 161.8 110 69.1
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 8.6e-38 161.8 300 53.7
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 8.6e-38 161.8 315 55.2
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 8.6e-38 161.8 306 52.0
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 1.1e-37 161.4 123 63.4
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 1.5e-37 161.0 320 43.8
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.5e-37 160.2 121 64.5
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 3.3e-37 159.8 339 45.7
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.3e-37 159.8 121 64.5
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 3.3e-37 159.8 114 69.3
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 4.3e-37 159.5 116 69.8
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 7.3e-37 158.7 123 61.8
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 7.3e-37 158.7 119 63.9
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 7.3e-37 158.7 315 44.1
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 9.5e-37 158.3 123 61.8
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 9.5e-37 158.3 307 58.0
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 1.2e-36 157.9 126 65.1
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 1.2e-36 157.9 126 65.1
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 1.2e-36 157.9 126 65.1
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 1.2e-36 157.9 126 65.1
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 1.2e-36 157.9 126 65.1
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 1.2e-36 157.9 121 63.6
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 1.2e-36 157.9 296 52.4
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 1.6e-36 157.5 305 58.0
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 1.6e-36 157.5 305 58.0
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 1.6e-36 157.5 305 58.0
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 1.6e-36 157.5 305 58.0
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 2.1e-36 157.1 298 50.3
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.1e-36 157.1 121 63.6
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.1e-36 157.1 118 64.4
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 3.6e-36 156.4 300 56.3
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 4.7e-36 156.0 324 55.6
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 4.7e-36 156.0 115 65.2
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 4.7e-36 156.0 123 59.3
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 6.2e-36 155.6 305 56.1
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 8.0e-36 155.2 128 64.1
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 1.0e-35 154.8 306 44.4
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 1.0e-35 154.8 114 62.3
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 2.3e-35 153.7 128 60.2
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 3.1e-35 153.3 114 62.3
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 3.1e-35 153.3 329 52.9
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 3.1e-35 153.3 124 59.7
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 6.8e-35 152.1 123 65.0
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 8.9e-35 151.8 309 35.3
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 8.9e-35 151.8 120 65.8
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 8.9e-35 151.8 315 45.1
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 1.2e-34 151.4 124 62.1
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 4.4e-34 149.4 313 56.2
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 4.4e-34 149.4 326 54.0
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 4.4e-34 149.4 321 45.8
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 4.4e-34 149.4 114 62.3
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 5.8e-34 149.1 322 50.9
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 5.8e-34 149.1 327 61.2
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 7.5e-34 148.7 117 59.8
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 2.2e-33 147.1 115 63.5
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 2.2e-33 147.1 108 64.8
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 3.7e-33 146.4 333 40.2
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 4.9e-33 146.0 114 59.6
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 6.4e-33 145.6 126 57.9
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 6.4e-33 145.6 112 61.6
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 8.3e-33 145.2 108 63.0
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 1.1e-32 144.8 115 60.9
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 1.9e-32 144.1 290 43.1
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 1.9e-32 144.1 309 54.4
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 1.9e-32 144.1 123 62.6
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 2.4e-32 143.7 114 63.2
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 2.4e-32 143.7 356 52.2
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 9.2e-32 141.7 117 57.3
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 2.0e-31 140.6 111 64.0
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 2.7e-31 140.2 120 56.7
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 3.5e-31 139.8 112 57.1
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 6.0e-31 139.0 307 42.0
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 1.0e-30 138.3 128 56.2
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 5.0e-30 136.0 110 58.2
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 1.5e-29 134.4 128 55.5
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 1.9e-29 134.0 305 36.1
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 2.5e-29 133.7 109 59.6
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 2.5e-29 133.7 123 56.1
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 9.5e-29 131.7 121 59.5
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 3.6e-28 129.8 333 55.0
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 6.2e-28 129.0 115 56.5
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 1.4e-27 127.9 97 69.1
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 6.8e-27 125.6 116 57.8
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 6.8e-27 125.6 114 58.8
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 8.9e-27 125.2 112 54.5
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 8.9e-27 125.2 114 53.5
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 8.9e-27 125.2 116 57.8
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 8.9e-27 125.2 116 57.8
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 8.9e-27 125.2 116 57.8
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 1.5e-26 124.4 121 52.1
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 2.0e-26 124.0 307 44.3
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 3.4e-26 123.2 109 56.0
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.3e-25 121.3 111 62.2
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 8.3e-25 118.6 114 53.5
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 8.3e-25 118.6 121 51.2
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 8.3e-25 118.6 114 56.1
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 3.0e-22 110.2 127 49.6
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 5.1e-22 109.4 91 53.8
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 8.6e-22 108.6 110 55.5
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 2.5e-21 107.1 108 50.9
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 5.6e-21 105.9 121 48.8
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 4.7e-20 102.8 106 49.1
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 6.0e-15 85.9 115 44.3
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 5.1e-14 82.8 125 40.8
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 5.1e-14 82.8 105 41.9
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 7.3e-13 79.0 219 53.9
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.8e-12 77.0 72 54.2
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 4.7e-12 76.3 108 40.7
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 1.1e-11 75.1 106 38.7
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 3.1e-11 73.6 108 38.9
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 4.9e-09 66.2 118 39.0
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 3.2e-08 63.5 109 34.9
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 4.2e-08 63.2 33 63.6
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 7.8e-07 58.9 114 30.7
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 3.9e-06 56.6 49 63.3


User provided reference genes

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