Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.5e-217 759.2 384 100.0
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 1.7e-213 745.7 384 98.7
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 3.6e-203 711.4 384 94.5
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 6.2e-187 657.5 338 99.1
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 9.9e-169 597.0 390 80.0
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.1e-164 583.6 384 77.9
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 4.3e-164 581.6 389 77.6
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.6e-163 579.7 391 77.2
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 1.1e-162 577.0 391 76.7
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 9.0e-162 573.9 375 76.3
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 2.0e-161 572.8 394 75.4
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 2.0e-161 572.8 374 75.9
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.0e-160 570.5 388 76.8
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 3.8e-160 568.5 394 75.1
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 7.1e-159 564.3 388 74.5
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 1.6e-158 563.1 395 73.9
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 2.1e-158 562.8 392 75.5
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.7e-158 562.4 323 83.3
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 4.6e-158 561.6 320 84.1
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 4.6e-158 561.6 390 74.1
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-157 559.7 346 79.8
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 3.0e-157 558.9 333 80.5
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 3.9e-157 558.5 387 73.6
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 5.1e-157 558.1 353 78.2
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 5.1e-157 558.1 318 83.3
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 5.7e-156 554.7 386 75.4
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 7.4e-156 554.3 386 73.8
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 9.6e-156 553.9 328 80.8
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 2.1e-155 552.7 333 79.9
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 2.1e-155 552.7 384 73.4
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 2.8e-155 552.4 318 84.0
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.8e-155 552.4 380 74.5
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 2.8e-155 552.4 374 74.6
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 6.3e-155 551.2 376 74.2
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 6.3e-155 551.2 368 75.3
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 8.2e-155 550.8 322 82.0
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 8.2e-155 550.8 321 81.3
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 8.2e-155 550.8 352 75.9
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.4e-154 550.1 318 82.1
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 2.4e-154 549.3 384 70.8
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 3.1e-154 548.9 346 76.6
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 6.9e-154 547.7 396 71.0
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 9.0e-154 547.4 379 73.6
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.5e-153 546.6 318 82.7
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 1.5e-153 546.6 373 72.4
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 2.6e-153 545.8 369 73.4
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 4.5e-153 545.0 390 72.3
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 5.9e-153 544.7 289 97.6
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 7.6e-153 544.3 364 74.7
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 7.6e-153 544.3 318 82.7
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 1.7e-152 543.1 322 81.4
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 2.2e-152 542.7 322 81.1
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.9e-152 542.3 366 74.3
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 5.0e-152 541.6 315 82.5
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 5.0e-152 541.6 315 82.5
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 5.0e-152 541.6 315 82.5
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 6.5e-152 541.2 318 82.1
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.1e-151 540.4 395 71.1
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.4e-151 540.0 393 72.0
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 2.5e-151 539.3 348 75.9
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 2.5e-151 539.3 362 73.8
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 3.2e-151 538.9 390 72.1
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 3.2e-151 538.9 334 77.5
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 5.5e-151 538.1 391 69.6
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 7.2e-151 537.7 359 76.0
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 9.3e-151 537.3 388 72.4
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 1.2e-150 537.0 316 82.0
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 2.1e-150 536.2 384 71.4
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 3.5e-150 535.4 383 71.8
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 7.9e-150 534.3 322 80.1
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.0e-149 533.9 346 74.9
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.3e-149 533.5 360 72.8
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 8.7e-149 530.8 390 72.3
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 1.5e-148 530.0 386 71.8
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 3.3e-148 528.9 369 73.4
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 7.4e-148 527.7 392 70.2
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 6.9e-146 521.2 394 69.8
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 4.5e-145 518.5 396 67.7
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.3e-144 516.9 323 77.4
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.2e-144 516.2 353 73.7
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 3.8e-144 515.4 384 69.5
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 1.9e-143 513.1 395 65.1
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 1.0e-141 507.3 316 77.5
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 1.4e-141 506.9 276 87.7
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 9.7e-140 500.7 386 65.8
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 4.2e-135 485.3 385 67.0
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 8.2e-131 471.1 268 84.3
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 4.1e-130 468.8 274 81.0
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 4.7e-126 455.3 296 81.1
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 6.7e-125 451.4 337 70.0
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 6.7e-125 451.4 267 81.6
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 8.8e-125 451.1 259 84.6
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 9.4e-119 431.0 325 61.8
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.2e-118 430.6 268 75.0
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 6.1e-118 428.3 319 63.3
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 2.0e-116 423.3 317 71.0
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 2.9e-112 409.5 318 61.0
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.1e-111 407.5 325 59.4
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 2.8e-107 392.9 267 73.0
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 9.2e-106 387.9 272 70.6
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 2.8e-102 376.3 290 67.6
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 9.8e-92 341.3 248 69.0
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 4.0e-85 319.3 269 66.5
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 8.9e-77 291.6 267 58.4
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 5.1e-72 275.8 222 64.4
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 9.6e-71 271.6 322 41.9
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 9.6e-71 271.6 322 41.9
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 4.7e-70 269.2 311 45.3
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 1.1e-69 268.1 338 44.1
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 1.3e-67 261.2 165 75.8
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 4.9e-67 259.2 154 80.5
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.2e-66 256.1 166 78.9
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 6.9e-61 238.8 130 89.2
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.0e-36 157.5 91 80.2
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 2.0e-36 157.5 406 31.5
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-34 151.0 104 67.3
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 1.6e-30 137.9 79 82.3
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.8e-30 137.1 90 74.4
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.1e-29 133.7 75 80.0
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 4.4e-23 113.2 105 57.1
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 1.3e-22 111.7 80 63.8
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 5.0e-19 99.8 74 70.3
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 1.8e-16 91.3 58 84.5
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.1e-15 88.6 54 74.1
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 3.3e-15 87.0 58 70.7
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 5.7e-15 86.3 47 87.2
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.1e-13 82.0 107 44.9
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.1e-13 82.0 107 44.9
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 9.1e-13 79.0 95 49.5
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 1.3e-11 75.1 297 26.3
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 2.9e-11 73.9 79 51.9
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 3.8e-11 73.6 107 49.5
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 6.5e-11 72.8 75 53.3
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 8.5e-11 72.4 105 49.5
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 9.4e-10 68.9 99 49.5
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.6e-09 68.2 301 25.9
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 1.4e-08 65.1 91 47.3
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 3.0e-08 63.9 42 73.8
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 6.7e-08 62.8 300 26.3
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 6.7e-08 62.8 291 25.1
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 6.7e-08 62.8 303 24.4
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 8.8e-08 62.4 33 81.8
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 1.2e-07 62.0 309 23.9
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 3.3e-07 60.5 360 24.2
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 4.4e-07 60.1 266 25.2
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 4.4e-07 60.1 292 24.7
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 5.7e-07 59.7 281 24.9
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 7.5e-07 59.3 289 24.9
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 9.7e-07 58.9 354 25.4
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 1.3e-06 58.5 273 24.2
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 2.2e-06 57.8 337 24.3
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 2.8e-06 57.4 287 24.0
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 2.8e-06 57.4 281 24.6
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 2.8e-06 57.4 281 22.8
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 2.8e-06 57.4 328 24.1
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 2.8e-06 57.4 283 23.0


User provided reference genes

Program Settings