Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.6e-126 454.5 221 100.0
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.6e-123 446.0 220 98.2
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 3.4e-121 438.3 221 96.4
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.4e-121 438.0 220 96.4
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.9e-120 434.5 220 95.5
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 9.6e-116 420.2 221 91.0
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 5.5e-103 377.9 215 84.2
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 3.5e-102 375.2 218 81.7
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 4.8e-99 364.8 219 79.9
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.1e-98 363.6 219 79.5
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 2.0e-97 359.4 217 79.3
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.6e-97 359.0 215 79.5
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 5.8e-97 357.8 220 76.8
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.6e-94 349.7 220 75.5
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 4.6e-94 348.2 219 77.2
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 7.9e-94 347.4 211 76.8
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 7.9e-94 347.4 217 77.9
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 6.7e-93 344.4 208 76.0
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.5e-92 343.2 219 76.3
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 7.4e-92 340.9 219 74.9
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 9.6e-92 340.5 216 75.0
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.1e-91 339.3 218 75.7
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 8.2e-91 337.4 214 75.7
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 1.8e-90 336.3 217 76.5
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 4.1e-90 335.1 211 78.2
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 6.9e-90 334.3 214 76.2
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 2.6e-89 332.4 214 74.8
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 4.5e-89 331.6 212 75.0
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 5.9e-89 331.3 216 75.0
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 1.0e-88 330.5 219 73.1
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 1.3e-88 330.1 214 75.7
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.7e-88 329.7 219 76.3
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 2.9e-88 328.9 214 75.7
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 2.9e-88 328.9 216 72.7
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 2.9e-88 328.9 218 73.9
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 7.2e-87 324.3 217 74.7
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.2e-86 323.6 214 74.8
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.6e-86 323.2 219 72.1
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 3.6e-86 322.0 212 72.2
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 3.6e-86 322.0 212 72.2
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 3.6e-86 322.0 214 72.0
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 3.6e-86 322.0 219 69.4
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 4.6e-86 321.6 219 71.7
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 6.1e-86 321.2 209 73.7
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 7.9e-86 320.9 219 71.7
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.0e-85 320.5 212 72.2
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-85 318.5 216 72.2
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-85 318.5 216 72.2
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-85 318.5 216 72.2
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-85 318.5 216 72.2
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-85 318.5 216 72.2
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 5.1e-85 318.2 220 69.1
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 6.7e-85 317.8 219 71.2
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 6.7e-85 317.8 209 72.7
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 1.1e-84 317.0 216 72.2
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 1.5e-84 316.6 209 72.2
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 1.5e-84 316.6 209 72.2
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 1.5e-84 316.6 209 72.2
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 1.5e-84 316.6 219 71.2
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 3.3e-84 315.5 210 71.4
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 3.7e-83 312.0 218 69.3
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 1.1e-82 310.5 214 67.8
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.4e-82 310.1 217 70.5
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 4.1e-82 308.5 208 70.7
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 4.1e-82 308.5 217 71.0
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 4.1e-82 308.5 217 71.0
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 9.0e-82 307.4 221 68.8
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.2e-81 307.0 221 68.8
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.5e-81 306.6 214 70.1
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 2.0e-81 306.2 217 69.6
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 4.5e-81 305.1 212 70.3
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 7.7e-81 304.3 215 69.3
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 1.7e-80 303.1 218 68.8
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 2.2e-80 302.8 215 67.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 3.8e-80 302.0 214 67.8
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 6.5e-80 301.2 221 68.3
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 8.5e-80 300.8 217 68.7
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.1e-79 300.4 220 67.3
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 1.9e-79 299.7 217 68.2
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.2e-79 298.9 215 68.8
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 4.2e-79 298.5 221 67.0
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 5.5e-79 298.1 200 71.0
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 5.5e-79 298.1 212 65.6
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 9.4e-79 297.4 220 66.8
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 4.6e-78 295.0 214 70.1
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 1.0e-77 293.9 211 69.2
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.4e-77 293.5 214 69.6
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 1.4e-77 293.5 217 67.3
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 1.4e-77 293.5 222 67.1
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 3.0e-77 292.4 216 66.2
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 1.5e-76 290.0 220 65.5
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 2.6e-76 289.3 212 65.6
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 3.3e-76 288.9 217 65.9
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.3e-75 287.0 216 65.3
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.7e-75 286.6 216 64.4
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 2.2e-75 286.2 211 67.8
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 2.2e-75 286.2 218 65.1
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 2.2e-75 286.2 220 65.9
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 3.7e-75 285.4 208 67.3
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 8.2e-75 284.3 216 64.8
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 1.8e-74 283.1 184 72.8
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 1.8e-74 283.1 213 65.3
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 1.2e-73 280.4 215 64.7
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 1.2e-73 280.4 215 64.7
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 2.0e-73 279.6 217 64.5
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 2.6e-73 279.3 219 60.3
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 5.9e-73 278.1 218 63.8
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 1.0e-72 277.3 211 61.6
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 6.5e-72 274.6 217 64.5
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 2.7e-70 269.2 216 63.0
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 2.7e-70 269.2 216 63.0
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.9e-69 265.4 212 60.8
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 5.2e-69 265.0 216 62.0
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 6.7e-69 264.6 168 77.4
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 3.3e-68 262.3 208 57.2
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 9.7e-68 260.8 208 58.7
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.8e-67 259.2 211 56.9
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 2.6e-65 252.7 214 58.9
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 1.0e-64 250.8 218 59.6
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 8.5e-64 247.7 169 72.8
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 1.9e-63 246.5 167 72.5
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 7.2e-63 244.6 159 74.2
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 2.3e-61 239.6 134 82.1
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 5.2e-61 238.4 219 56.6
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 5.3e-58 228.4 161 70.2
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.3e-56 223.8 162 66.7
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 3.8e-56 222.2 171 64.9
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 9.4e-55 217.6 216 54.6
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 2.7e-54 216.1 210 57.1
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 6.8e-53 211.5 130 75.4
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 3.4e-52 209.1 220 51.8
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 2.1e-46 189.9 136 65.4
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.2e-44 184.1 222 49.1
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 4.4e-44 182.2 217 49.8
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 4.5e-41 172.2 133 63.2
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 3.5e-33 146.0 89 78.7
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 4.6e-33 145.6 91 74.7
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 9.8e-28 127.9 96 65.6
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 4.9e-19 99.0 210 36.2
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 2.3e-08 63.5 142 29.6
Manes.02G096600 Manihot esculenta HOM05D003144 ORTHO05D003539 2.3e-08 63.5 144 31.2
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 3.9e-08 62.8 125 34.4
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 6.6e-08 62.0 160 29.4
Sabra05G0099200 Salix brachista HOM05D003144 ORTHO05D003539 8.6e-08 61.6 141 29.8
CDE11G1071 Ceratophyllum demersum HOM05D003144 ORTHO05D003539 1.5e-07 60.8 170 25.3
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 1.5e-07 60.8 131 29.8
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 1.9e-07 60.5 151 29.8
Cre06.g295250 Chlamydomonas reinhardtii HOM05D003144 ORTHO05D003539 1.9e-07 60.5 156 28.8
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 2.5e-07 60.1 173 25.4
Haze_15060 Corylus avellana HOM05D003144 ORTHO05D003539 3.3e-07 59.7 144 31.9
Cfa004341 Carpinus fangiana HOM05D003144 ORTHO05D003539 5.6e-07 58.9 144 31.9
AUR62004087 Chenopodium quinoa HOM05D003144 ORTHO05D003539 5.6e-07 58.9 155 27.7
GSVIVG01018921001 Vitis vinifera HOM05D003144 ORTHO05D003539 2.8e-06 56.6 126 29.4
Actinidia35629 Actinidia chinensis HOM05D003144 ORTHO05D003539 3.6e-06 56.2 157 25.5
DCAR_021484 Daucus carota HOM05D003144 ORTHO05D003539 6.2e-06 55.5 136 27.9


User provided reference genes

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