Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2551 Fragaria x ananassa HOM05D006085 ORTHO05D007559 1.1e-36 156.0 73 100.0
FAN14G0301 Fragaria x ananassa HOM05D006085 ORTHO05D007559 2.0e-33 145.2 73 94.5
FAN05G3848 Fragaria x ananassa HOM05D006085 ORTHO05D007559 2.6e-33 144.8 73 94.5
FvH4_6g26520 Fragaria vesca HOM05D006085 ORTHO05D007559 2.2e-29 131.7 63 96.8
FAN09G4168 Fragaria x ananassa HOM05D001433 ORTHO05D005172 1.0e-21 106.3 50 98.0
Prupe.3G189400 Prunus persica HOM05D006085 ORTHO05D007559 2.5e-20 101.7 69 65.2
RcHm_v2.0_Chr2g0127641 Rosa chinensis HOM05D006085 ORTHO05D007559 2.5e-20 101.7 60 76.7
MD17G1236100 Malus domestica HOM05D006085 ORTHO05D007559 1.6e-19 99.0 60 71.7
TAR626G0071 Trochodendron aralioides HOM05D006085 ORTHO05D007559 8.9e-18 93.2 62 67.7
Thecc.02G182800 Theobroma cacao HOM05D006085 ORTHO05D007559 1.2e-14 82.8 62 58.1
Ciclev10014891m.g Citrus clementina HOM05D006085 ORTHO05D007559 1.6e-14 82.4 62 64.5
Cpa.g.sc83.67 Carica papaya HOM05D006085 ORTHO05D007559 3.5e-14 81.3 58 63.8
Duzib052G1056 Durio zibethinus HOM05D006085 ORTHO05D007559 3.5e-14 81.3 71 52.1
Prupe.3G139700 Prunus persica HOM05D006085 ORTHO05D007559 3.5e-14 81.3 50 72.0
BcaB08g34934 Brassica carinata HOM05D006085 ORTHO05D007559 7.8e-14 80.1 63 52.4
Duzib132G0978 Durio zibethinus HOM05D006085 ORTHO05D007559 7.8e-14 80.1 57 63.2
Gohir.A13G055500 Gossypium hirsutum HOM05D006085 ORTHO05D007559 7.8e-14 80.1 58 63.8
MD08G1245300 Malus domestica HOM05D006085 ORTHO05D007559 7.8e-14 80.1 47 74.5
CANSAT64G0553 Cannabis sativa HOM05D006085 ORTHO05D007559 1.0e-13 79.7 61 59.0
CsaV3_7G005870 Cucumis sativus L. HOM05D006085 ORTHO05D007559 1.0e-13 79.7 62 58.1
THA.LOC104804055 Tarenaya hassleriana HOM05D006085 ORTHO05D007559 1.0e-13 79.7 61 55.7
AL3G53720 Arabidopsis lyrata HOM05D006085 ORTHO05D007559 1.7e-13 79.0 58 58.6
Gohir.D13G066600 Gossypium hirsutum HOM05D006085 ORTHO05D007559 1.7e-13 79.0 59 61.0
Haze_13204 Corylus avellana HOM05D006085 ORTHO05D007559 2.3e-13 78.6 61 62.3
Gorai.013G075800 Gossypium raimondii HOM05D006085 ORTHO05D007559 2.3e-13 78.6 58 62.1
AT2G20635 Arabidopsis thaliana HOM05D006085 ORTHO05D007559 3.9e-13 77.8 61 55.7
CiPaw.03G179300 Carya illinoinensis HOM05D006085 ORTHO05D007559 3.9e-13 77.8 62 58.1
ClCG07G002490 Citrullus lanatus HOM05D006085 ORTHO05D007559 3.9e-13 77.8 62 56.5
vmacro12328 Vaccinium macrocarpon HOM05D006085 ORTHO05D007559 5.0e-13 77.4 62 56.5
Lsat_1_v5_gn_4_66841 Lactuca sativa HOM05D006085 ORTHO05D007559 6.6e-13 77.0 59 55.9
Rhsim06G0139100 Rhododendron simsii HOM05D006085 ORTHO05D007559 6.6e-13 77.0 63 58.7
CARHR111290 Cardamine hirsuta HOM05D006085 ORTHO05D007559 1.1e-12 76.3 61 55.7
Sed0017729 Sechium edule HOM05D006085 ORTHO05D007559 1.1e-12 76.3 61 57.4
Hund01031 Selenicereus undatus HOM05D006085 ORTHO05D007559 1.5e-12 75.9 60 55.0
TWI59G1154 Tripterygium wilfordii HOM05D006085 ORTHO05D007559 1.5e-12 75.9 59 62.7
CSS0044112 Camellia sinensis var. sinensis HOM05D006085 ORTHO05D007559 1.9e-12 75.5 62 53.2
Carub.0003s3516 Capsella rubella HOM05D006085 ORTHO05D007559 1.9e-12 75.5 59 57.6
GSVIVG01020577001 Vitis vinifera HOM05D006085 ORTHO05D007559 1.9e-12 75.5 85 47.1
Sc12g0003150 Simmondsia chinensis HOM05D006085 ORTHO05D007559 3.3e-12 74.7 65 55.4
Aa31LG8G17530 Aethionema arabicum HOM05D006085 ORTHO05D007559 4.3e-12 74.3 58 53.4
COL.COLO4_05950 Corchorus olitorius HOM05D006085 ORTHO05D007559 4.3e-12 74.3 59 54.2
Atru.chr6.2894 Acer truncatum HOM05D006085 ORTHO05D007559 5.6e-12 73.9 62 56.5
Actinidia30466 Actinidia chinensis HOM05D006085 ORTHO05D007559 5.6e-12 73.9 62 51.6
Solyc07g053820.3 Solanum lycopersicum HOM05D006085 ORTHO05D007559 5.6e-12 73.9 68 51.5
Nn1g04152 Nelumbo nucifera HOM05D006085 ORTHO05D007559 9.5e-12 73.2 62 53.2
Phvul.011G125900 Phaseolus vulgaris HOM05D006085 ORTHO05D007559 1.2e-11 72.8 61 57.4
Thhalv10001957m.g Eutrema salsugineum HOM05D006085 ORTHO05D007559 1.6e-11 72.4 61 50.8
Sopen07g027790 Solanum pennellii HOM05D006085 ORTHO05D007559 1.6e-11 72.4 68 50.0
PGSC0003DMG400032825 Solanum tuberosum HOM05D006085 ORTHO05D007559 1.6e-11 72.4 68 50.0
CAN.G209.32 Capsicum annuum HOM05D006085 ORTHO05D007559 2.1e-11 72.0 68 48.5
HanXRQChr10g0284071 Helianthus annuus HOM05D006085 ORTHO05D007559 2.1e-11 72.0 59 57.6
A09p58770 Brassica napus HOM05D006085 ORTHO05D007559 3.6e-11 71.2 61 50.8
BraA09t41263Z Brassica rapa HOM05D006085 ORTHO05D007559 3.6e-11 71.2 61 50.8
arahy.Tifrunner.gnm1.ann1.RY71RI Arachis hypogaea HOM05D006085 ORTHO05D007559 6.1e-11 70.5 62 53.2
Cc00_g12340 Coffea canephora HOM05D006085 ORTHO05D007559 6.1e-11 70.5 71 49.3
Psat7g168600 Pisum sativum HOM05D006085 ORTHO05D007559 6.1e-11 70.5 61 59.0
TPR.G31028 Trifolium pratense HOM05D006085 ORTHO05D007559 6.1e-11 70.5 60 58.3
MSTRG.15247 Avicennia marina HOM05D006085 ORTHO05D007559 8.0e-11 70.1 63 57.1
Lalb_Chr19g0135161 Lupinus albus HOM05D006085 ORTHO05D007559 8.0e-11 70.1 58 60.3
arahy.Tifrunner.gnm1.ann1.C4PCKW Arachis hypogaea HOM05D006085 ORTHO05D007559 1.4e-10 69.3 62 54.8
ECA234G4181 Erigeron canadensis HOM05D006085 ORTHO05D007559 1.4e-10 69.3 59 52.5
arahy.Tifrunner.gnm1.ann1.UWD03M Arachis hypogaea HOM05D006085 ORTHO05D007559 1.8e-10 68.9 62 54.8
Cc05_g07490 Coffea canephora HOM05D006085 ORTHO05D007559 1.8e-10 68.9 62 51.6
Potri.007G139000 Populus trichocarpa HOM05D006085 ORTHO05D007559 1.8e-10 68.9 62 51.6
Glyma.06G290500 Glycine max HOM05D006085 ORTHO05D007559 2.3e-10 68.6 61 57.4
Manes.13G147400 Manihot esculenta HOM05D006085 ORTHO05D007559 2.3e-10 68.6 58 58.6
Nitab4.5_0000638g0100 Nicotiana tabacum HOM05D006085 ORTHO05D007559 2.3e-10 68.6 72 47.2
PSO541G4164 Papaver somniferum HOM05D006085 ORTHO05D007559 2.3e-10 68.6 58 51.7
PSO675G5281 Papaver somniferum HOM05D006085 ORTHO05D007559 2.3e-10 68.6 58 51.7
Nitab4.5_0001752g0030 Nicotiana tabacum HOM05D006085 ORTHO05D007559 3.1e-10 68.2 72 45.8
Sp3g33890 Schrenkiella parvula HOM05D006085 ORTHO05D007559 3.1e-10 68.2 61 50.8
Oeu036070.3 Olea europaea HOM05D006085 ORTHO05D007559 4.0e-10 67.8 61 54.1
VMungo1127G1010 Vigna mungo HOM05D006085 ORTHO05D007559 4.0e-10 67.8 59 54.2
Migut.M00167 Erythranthe guttata HOM05D006085 ORTHO05D007559 5.2e-10 67.4 63 52.4
Lj3g0015664 Lotus japonicus HOM05D006085 ORTHO05D007559 6.8e-10 67.0 63 54.0
Sabra07G0112000 Salix brachista HOM05D006085 ORTHO05D007559 6.8e-10 67.0 62 51.6
C08p42090 Brassica napus HOM05D006085 ORTHO05D007559 1.5e-09 65.9 58 51.7
BolC8t51769H Brassica oleracea HOM05D006085 ORTHO05D007559 1.5e-09 65.9 58 51.7
SGA_v2.0_scaffold70G23511 Striga asiatica HOM05D006085 ORTHO05D007559 1.5e-09 65.9 60 56.7
QL08p039688 Quercus lobata HOM05D006085 ORTHO05D007559 2.6e-09 65.1 59 59.3
Peaxi162Scf00981g00430 Petunia axillaris HOM05D006085 ORTHO05D007559 3.4e-09 64.7 60 51.7
Ah.01g015320 Amaranthus hybridus HOM05D006085 ORTHO05D007559 7.5e-09 63.5 60 46.7
Manes.13G145916 Manihot esculenta HOM05D006085 ORTHO05D007559 1.3e-08 62.8 58 53.4
MBI18_g34208_MAGBIO Magnolia biondii HOM05D006085 ORTHO05D007559 2.2e-08 62.0 67 40.3
ATR0217G009 Amborella trichopoda HOM05D006085 ORTHO05D007559 3.7e-08 61.2 59 50.8
DCAR_021253 Daucus carota HOM05D006085 ORTHO05D007559 3.7e-08 61.2 59 50.8
unitig_21.g20425 Utricularia gibba HOM05D006085 ORTHO05D007559 3.7e-08 61.2 66 53.0
Aqoxy1G02363 Aquilegia oxysepala HOM05D006085 ORTHO05D007559 5.4e-07 57.4 61 47.5
Hma1.2p1_0002F.1_g002100 Hydrangea macrophylla HOM05D006085 ORTHO05D007559 5.4e-07 57.4 45 53.3
Medtr4g078555 Medicago truncatula HOM05D006085 ORTHO05D007559 5.4e-07 57.4 50 58.0
HPP92_014185 Vanilla planifolia HOM05D006085 ORTHO05D007559 9.2e-07 56.6 58 48.3
Lalb_Chr10g0095291 Lupinus albus HOM05D004939 ORTHO05D005843 3.5e-06 54.7 59 47.5
Ca_12499_v3 Cicer arietinum L. HOM05D004939 ORTHO05D005843 4.6e-06 54.3 59 47.5
PGSC0003DMG400010009 Solanum tuberosum HOM05D004939 ORTHO05D005843 4.6e-06 54.3 63 42.9


User provided reference genes

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