Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.7e-55 217.6 109 100.0
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.8e-54 215.7 109 99.1
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.3e-54 215.3 109 98.2
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.2e-52 208.8 109 96.3
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 2.2e-52 208.8 109 95.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 3.7e-44 181.4 109 82.6
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 4.1e-43 177.9 109 79.8
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.2e-40 167.9 111 74.8
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 2.1e-39 165.6 112 75.0
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 2.1e-39 165.6 102 79.4
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.1e-39 165.6 111 73.9
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 6.1e-39 164.1 109 73.4
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 6.1e-39 164.1 83 98.8
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 6.1e-39 164.1 111 73.0
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.0e-38 163.3 111 73.9
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.4e-38 162.9 112 81.2
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.4e-38 162.9 112 73.2
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 3.0e-38 161.8 109 73.4
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 3.0e-38 161.8 112 72.3
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 5.2e-38 161.0 108 75.0
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.7e-38 160.6 113 70.8
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.5e-37 159.5 111 73.9
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.5e-37 159.5 109 72.5
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.0e-37 159.1 113 69.9
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 2.6e-37 158.7 108 68.5
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.3e-37 158.3 112 71.4
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 3.3e-37 158.3 113 70.8
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 7.5e-37 157.1 114 71.9
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.3e-36 156.4 113 71.7
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 1.7e-36 156.0 109 71.6
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 2.2e-36 155.6 108 73.1
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.8e-36 155.2 114 69.3
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 6.3e-36 154.1 114 71.9
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 6.3e-36 154.1 114 71.9
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.1e-35 153.3 114 71.9
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.8e-35 152.5 97 85.6
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.4e-35 152.1 114 71.1
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 5.3e-35 151.0 118 66.1
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 9.1e-35 150.2 111 67.6
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.2e-34 149.8 115 65.2
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.2e-34 149.8 113 68.1
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.6e-34 149.4 109 69.7
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 2.0e-34 149.1 88 81.8
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.7e-34 148.7 110 71.8
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.7e-34 148.7 111 69.4
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.7e-34 148.7 90 81.1
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 3.5e-34 148.3 111 71.2
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 4.5e-34 147.9 113 65.5
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 5.9e-34 147.5 116 65.5
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.7e-34 147.1 108 70.4
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.7e-34 147.1 108 70.4
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 7.7e-34 147.1 108 70.4
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.0e-33 146.7 143 55.9
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.0e-33 146.7 110 70.0
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.2e-33 145.6 141 56.7
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.2e-33 145.6 111 65.8
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 5.0e-33 144.4 89 77.5
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 5.0e-33 144.4 103 68.9
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 5.0e-33 144.4 108 65.7
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 6.5e-33 144.1 112 64.3
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 8.5e-33 143.7 117 65.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.1e-32 143.3 109 66.1
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.9e-32 142.5 120 63.3
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.5e-32 142.1 95 74.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 3.2e-32 141.7 111 67.6
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 3.2e-32 141.7 110 65.5
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 4.2e-32 141.4 109 67.0
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 4.2e-32 141.4 110 67.3
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 4.2e-32 141.4 92 76.1
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 7.2e-32 140.6 113 62.8
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 9.4e-32 140.2 87 78.2
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.2e-31 139.8 95 74.7
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-31 139.4 112 62.5
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 2.1e-31 139.0 111 62.2
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-31 138.7 112 62.5
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-31 138.7 112 62.5
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 2.7e-31 138.7 112 62.5
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.6e-31 138.3 112 62.5
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 4.7e-31 137.9 112 62.5
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 4.7e-31 137.9 100 70.0
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 6.1e-31 137.5 112 62.5
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 8.0e-31 137.1 112 61.6
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.0e-30 136.7 105 66.7
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.4e-30 136.3 112 65.2
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.4e-30 136.3 112 61.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.4e-30 136.3 112 61.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.4e-30 136.3 112 63.4
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.4e-30 136.3 95 71.6
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.8e-30 136.0 111 62.2
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.8e-30 136.0 118 60.2
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.3e-30 135.6 105 65.7
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 2.3e-30 135.6 112 61.6
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.3e-30 135.6 109 67.0
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 3.0e-30 135.2 91 68.1
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 4.0e-30 134.8 103 69.9
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.2e-30 134.4 97 67.0
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 6.8e-30 134.0 155 52.9
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 8.8e-30 133.7 88 75.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 8.8e-30 133.7 100 67.0
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.2e-29 133.3 114 62.3
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 1.5e-29 132.9 109 60.6
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.5e-29 132.9 97 66.0
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.0e-29 132.5 113 63.7
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.0e-29 132.5 112 61.6
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.6e-29 132.1 112 61.6
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.4e-29 131.7 112 63.4
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 5.7e-29 131.0 109 61.5
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 7.5e-29 130.6 96 69.8
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 7.5e-29 130.6 87 75.9
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.3e-28 129.8 85 74.1
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.7e-28 129.4 111 62.2
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.7e-28 129.4 112 60.7
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 2.8e-28 128.6 99 67.7
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 3.7e-28 128.3 111 62.2
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.7e-28 128.3 110 60.9
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 4.8e-28 127.9 87 74.7
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.8e-28 127.9 91 69.2
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.1e-27 126.7 116 57.8
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.1e-27 126.7 113 60.2
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.8e-27 125.9 154 46.8
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 5.9e-26 120.9 105 60.0
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.7e-25 119.4 74 73.0
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.7e-25 119.4 74 73.0
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.3e-25 119.0 94 63.8
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 5.0e-25 117.9 84 70.2
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.9e-24 115.9 117 57.3
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 3.3e-24 115.2 116 52.6
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.3e-24 115.2 74 71.6
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.6e-23 112.8 88 65.9
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.1e-23 112.5 84 65.5
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.1e-23 112.5 83 66.3
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.8e-23 112.1 78 73.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 2.8e-23 112.1 105 62.9
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.7e-23 111.3 91 67.0
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 6.1e-23 110.9 111 55.9
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.4e-22 109.8 79 67.1
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 4.0e-22 108.2 91 62.6
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.8e-20 102.1 99 60.6
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 7.0e-19 97.4 85 62.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.8e-18 94.0 86 60.5
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.3e-17 93.2 63 71.4
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 3.8e-17 91.7 83 56.6
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-16 89.4 55 87.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 5.6e-16 87.8 87 54.0
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 4.7e-15 84.7 74 58.1
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 4.7e-15 84.7 79 55.7
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 4.7e-15 84.7 69 58.0
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 6.1e-15 84.3 72 58.3
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 6.1e-15 84.3 72 58.3
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.4e-14 83.2 67 55.2
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 5.2e-14 81.3 49 77.6
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 7.5e-13 77.4 48 79.2
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.3e-12 76.6 67 55.2
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.3e-12 76.6 63 58.7
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.9e-12 74.7 61 65.6
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 8.3e-12 73.9 67 52.2
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.1e-11 73.6 46 76.1
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 2.0e-10 69.3 55 61.8
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.6e-08 61.2 60 61.7
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 2.8e-07 58.9 78 42.3
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 3.6e-07 58.5 64 43.8
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 3.6e-07 58.5 64 43.8
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.8e-06 56.2 72 43.1


User provided reference genes

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