Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.4e-184 647.5 321 100.0
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.5e-112 408.3 322 70.2
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 6.0e-111 404.8 322 70.5
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.0e-110 404.1 322 69.9
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.3e-110 402.9 322 69.3
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 5.9e-98 361.7 328 64.0
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 2.1e-79 300.1 338 54.7
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.2e-76 290.0 343 53.1
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 4.8e-76 288.9 281 55.9
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 8.5e-73 278.1 286 56.6
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 9.4e-72 274.6 325 51.7
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.8e-70 270.4 307 52.8
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 2.3e-70 270.0 320 51.2
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 4.0e-70 269.2 325 51.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 8.8e-70 268.1 284 53.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.2e-69 267.7 307 51.8
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 7.5e-69 265.0 267 55.8
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 7.5e-69 265.0 267 55.8
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 2.2e-68 263.5 282 55.3
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 2.8e-68 263.1 338 49.7
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 4.8e-68 262.3 277 54.9
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 8.3e-68 261.5 324 49.7
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.8e-67 260.4 265 55.5
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 9.1e-67 258.1 279 53.8
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.2e-66 257.7 291 51.9
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.2e-66 257.7 279 51.6
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.2e-66 257.7 276 54.3
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.6e-66 257.3 292 52.1
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 2.0e-66 256.9 267 54.3
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 4.5e-66 255.8 308 49.4
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 7.7e-66 255.0 284 52.5
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.7e-65 253.8 264 54.9
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 3.8e-65 252.7 292 51.4
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.8e-65 252.7 322 47.2
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 3.8e-65 252.7 271 53.1
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 6.6e-65 251.9 266 54.1
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.1e-64 251.1 282 51.8
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.9e-64 250.4 323 48.9
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 5.5e-64 248.8 267 54.3
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.6e-63 247.3 269 54.3
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.6e-63 247.3 269 54.3
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.6e-63 247.3 269 54.3
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.6e-63 247.3 269 54.3
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 1.6e-63 247.3 294 51.0
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 3.6e-63 246.1 269 54.3
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.7e-63 245.7 264 53.8
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 4.7e-63 245.7 267 53.6
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 4.7e-63 245.7 280 51.8
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 4.7e-63 245.7 275 52.7
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 4.7e-63 245.7 282 50.7
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 4.7e-63 245.7 277 52.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.1e-63 245.4 306 49.0
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 8.0e-63 245.0 267 52.8
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.0e-62 244.6 277 51.6
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.0e-62 244.6 265 53.2
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.3e-62 243.4 268 50.7
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.0e-62 243.0 287 50.2
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 3.0e-62 243.0 272 50.7
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.0e-62 242.7 268 51.5
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 5.2e-62 242.3 269 53.2
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 8.9e-62 241.5 264 53.8
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 8.9e-62 241.5 269 53.2
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.5e-61 240.7 267 52.4
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.5e-61 240.7 283 50.9
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.0e-61 240.4 269 53.2
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.0e-61 240.4 269 52.4
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.6e-61 240.0 269 53.2
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.6e-61 240.0 269 53.2
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 2.6e-61 240.0 269 53.2
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 3.4e-61 239.6 269 52.8
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 3.4e-61 239.6 269 52.8
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.4e-61 239.6 317 46.4
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 4.4e-61 239.2 264 52.7
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.5e-61 238.4 267 52.1
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 9.8e-61 238.0 285 48.8
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 9.8e-61 238.0 277 49.8
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.3e-60 237.7 322 46.9
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 2.2e-60 236.9 277 52.0
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 2.2e-60 236.9 290 48.3
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 2.8e-60 236.5 267 52.8
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 4.9e-60 235.7 261 51.0
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 4.9e-60 235.7 286 49.0
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 8.3e-60 235.0 268 48.9
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.8e-59 233.8 283 50.5
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 7.0e-59 231.9 280 49.3
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 9.2e-59 231.5 267 50.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 9.2e-59 231.5 267 50.9
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.2e-58 231.1 261 49.8
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.0e-58 230.3 268 51.1
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.0e-58 230.3 263 50.2
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.0e-58 230.3 277 51.6
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.0e-58 230.3 280 49.3
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.0e-58 230.3 296 48.6
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 2.7e-58 229.9 282 50.4
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 5.9e-58 228.8 289 46.4
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.9e-58 228.8 266 51.5
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 7.8e-58 228.4 291 47.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.0e-57 228.0 282 50.7
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 2.3e-57 226.9 282 50.4
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.9e-57 226.5 279 47.7
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.9e-57 226.5 282 48.2
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.9e-57 226.1 294 47.6
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 6.6e-57 225.3 287 47.4
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-56 224.6 270 51.5
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.5e-56 224.2 292 45.9
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.5e-56 224.2 280 47.5
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.5e-56 223.4 275 48.4
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 3.3e-56 223.0 297 45.5
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.3e-56 223.0 298 46.6
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 5.6e-56 222.2 289 46.0
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 5.6e-56 222.2 280 47.1
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 5.6e-56 222.2 280 47.1
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.3e-56 221.9 296 46.6
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 9.5e-56 221.5 270 50.7
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.1e-55 220.3 268 49.3
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 2.8e-55 219.9 270 50.4
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 2.8e-55 219.9 270 50.4
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 2.8e-55 219.9 295 45.8
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 8.0e-55 218.4 263 47.1
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.0e-54 218.0 267 46.8
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 1.8e-54 217.2 279 47.7
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 2.3e-54 216.9 270 50.0
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 2.3e-54 216.9 267 46.4
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.3e-54 216.9 287 46.7
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.1e-54 216.5 293 46.4
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-53 214.5 270 49.6
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.0e-53 213.8 320 43.4
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.0e-53 213.8 293 46.1
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 7.5e-53 211.8 277 45.5
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 6.4e-52 208.8 269 46.5
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.9e-51 207.2 239 50.6
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.4e-51 206.8 269 45.7
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.4e-51 206.8 269 45.7
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 5.4e-51 205.7 269 45.4
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 5.4e-51 205.7 269 45.4
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 5.4e-51 205.7 269 45.4
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.6e-50 204.1 285 46.3
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 3.5e-50 203.0 270 46.3
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.3e-49 201.1 279 46.2
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-48 197.6 276 43.1
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 6.2e-47 192.2 269 45.4
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 6.2e-47 192.2 274 46.4
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 6.8e-46 188.7 253 46.6
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.5e-42 176.4 256 43.8
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.9e-41 172.9 230 47.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.6e-39 167.5 257 41.6
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.8e-38 164.1 101 80.2
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 5.2e-38 162.5 101 79.2
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.2e-37 161.4 280 39.6
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 5.8e-37 159.1 266 40.6
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 2.4e-35 153.7 89 85.4
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 6.6e-33 145.6 255 40.8
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.2e-30 136.0 89 77.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 4.2e-27 126.3 113 56.6
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-24 117.9 279 32.3
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.1e-22 110.2 77 68.8
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.0e-21 107.5 285 30.9
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.5e-16 90.5 73 56.2
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.3e-15 88.2 226 31.0
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.4e-14 84.0 222 28.4
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.7e-10 70.5 64 53.1
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.3e-09 67.4 65 52.3
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 3.0e-09 67.0 81 49.4
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.5e-08 63.9 71 50.7
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 9.6e-08 62.0 44 68.2


User provided reference genes

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