Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.2e-47 191.8 88 100.0
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 1.4e-46 189.1 88 98.9
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.4e-46 189.1 88 98.9
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.2e-46 187.6 88 97.7
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 9.3e-46 186.4 88 96.6
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 6.0e-45 183.7 88 95.5
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 1.3e-44 182.6 88 94.3
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 3.9e-44 181.0 88 93.2
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 3.9e-44 181.0 88 93.2
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 1.9e-43 178.7 88 90.9
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 1.9e-43 178.7 88 92.0
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 7.3e-43 176.8 88 89.8
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 7.3e-43 176.8 88 90.9
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 7.3e-43 176.8 88 90.9
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 7.3e-43 176.8 88 90.9
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 2.8e-42 174.9 88 92.0
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 2.8e-42 174.9 87 90.8
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 6.2e-42 173.7 87 89.7
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 2.4e-41 171.8 87 88.5
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 2.4e-41 171.8 88 87.5
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 3.1e-41 171.4 85 91.8
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 5.3e-41 170.6 86 88.4
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 5.3e-41 170.6 85 91.8
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 5.3e-41 170.6 82 92.7
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 1.5e-40 169.1 88 88.6
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 2.0e-40 168.7 88 85.2
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 2.6e-40 168.3 85 88.2
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 3.4e-40 167.9 88 87.5
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 3.4e-40 167.9 88 87.5
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 3.4e-40 167.9 88 88.6
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 3.4e-40 167.9 88 88.6
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 5.8e-40 167.2 85 89.4
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 7.6e-40 166.8 88 85.2
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 2.2e-39 165.2 88 85.2
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 3.8e-39 164.5 88 86.4
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 6.4e-39 163.7 82 89.0
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 8.4e-39 163.3 88 85.2
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 1.1e-38 162.9 88 85.2
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 1.4e-38 162.5 88 85.2
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 1.4e-38 162.5 88 85.2
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 1.4e-38 162.5 88 85.2
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 1.9e-38 162.2 87 85.1
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.9e-38 162.2 85 85.9
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 1.9e-38 162.2 88 85.2
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 1.9e-38 162.2 82 87.8
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 2.4e-38 161.8 88 86.4
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 4.2e-38 161.0 88 84.1
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 4.2e-38 161.0 88 84.1
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 4.2e-38 161.0 87 83.9
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 4.2e-38 161.0 88 84.1
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 4.2e-38 161.0 87 83.9
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 4.2e-38 161.0 87 83.9
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 4.2e-38 161.0 88 84.1
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 5.4e-38 160.6 88 84.1
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 5.4e-38 160.6 87 85.1
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 9.3e-38 159.8 87 83.9
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 1.2e-37 159.5 88 84.1
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 1.6e-37 159.1 84 85.7
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 1.6e-37 159.1 84 85.7
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 2.7e-37 158.3 87 80.5
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 2.7e-37 158.3 83 84.3
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 3.5e-37 157.9 88 84.1
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 4.6e-37 157.5 85 85.9
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 4.6e-37 157.5 83 85.5
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 4.6e-37 157.5 83 84.3
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 4.6e-37 157.5 83 83.1
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 6.0e-37 157.1 87 81.6
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 7.9e-37 156.8 88 84.1
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 1.0e-36 156.4 83 81.9
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.3e-36 156.0 88 81.8
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 2.3e-36 155.2 84 83.3
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 3.9e-36 154.5 83 80.7
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 3.9e-36 154.5 90 81.1
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 5.1e-36 154.1 87 81.6
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 6.7e-36 153.7 88 83.0
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 2.5e-35 151.8 85 78.8
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 2.5e-35 151.8 85 78.8
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 2.5e-35 151.8 85 78.8
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 2.5e-35 151.8 85 78.8
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 2.5e-35 151.8 86 81.4
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 2.5e-35 151.8 82 82.9
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 5.6e-35 150.6 89 79.8
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 9.6e-35 149.8 88 79.5
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 1.3e-34 149.4 84 78.6
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.6e-34 149.1 88 80.7
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 6.2e-34 147.1 87 79.3
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 8.1e-34 146.7 79 82.3
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 8.1e-34 146.7 82 80.5
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.8e-33 145.6 87 78.2
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 5.3e-33 144.1 87 77.0
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 5.3e-33 144.1 109 66.1
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 9.0e-33 143.3 83 77.1
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 2.6e-32 141.7 84 75.0
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 9.9e-32 139.8 76 80.3
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 6.4e-31 137.1 87 74.7
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.4e-31 136.7 68 88.2
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 5.5e-30 134.0 65 93.8
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 2.7e-29 131.7 88 72.7
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 7.9e-29 130.2 78 73.1
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.5e-27 125.9 62 90.3
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 7.4e-27 123.6 61 88.5
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 4.8e-26 120.9 64 84.4
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 1.5e-24 115.9 61 80.3
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 5.1e-20 100.9 50 90.0
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 8.2e-18 93.6 52 76.9
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 5.3e-17 90.9 66 60.6
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 7.7e-16 87.0 61 63.9
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.7e-15 85.9 38 100.0
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.5e-15 83.6 40 92.5
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.1e-13 79.0 40 85.0
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 1.4e-12 76.3 58 58.6
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 5.1e-12 74.3 45 77.8
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 1.3e-10 69.7 46 67.4


User provided reference genes

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