Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.1e-129 464.2 233 100.0
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 4.8e-126 454.5 233 97.0
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.8e-126 454.5 233 97.0
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.3e-123 446.4 233 94.8
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.5e-123 444.1 233 94.8
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 4.2e-122 441.4 233 93.1
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.2e-120 434.5 251 88.0
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 3.9e-99 365.2 234 77.8
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 1.0e-96 357.1 229 79.0
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 3.1e-96 355.5 229 79.0
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 4.0e-88 328.6 233 70.0
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 6.8e-88 327.8 233 68.2
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 1.2e-87 327.0 233 69.1
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 1.5e-87 326.6 233 68.7
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 2.6e-87 325.9 233 68.7
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 3.4e-87 325.5 226 69.5
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 6.4e-86 321.2 227 69.6
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 6.4e-86 321.2 226 67.3
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 1.1e-85 320.5 227 70.9
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.1e-85 320.5 233 68.7
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 1.1e-85 320.5 233 69.1
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.4e-85 320.1 228 68.4
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.4e-85 320.1 226 69.0
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 2.4e-85 319.3 233 68.7
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 4.1e-85 318.5 233 68.2
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 7.1e-85 317.8 226 68.1
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 7.1e-85 317.8 226 68.1
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 9.2e-85 317.4 234 68.4
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.2e-84 317.0 233 66.1
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 2.7e-84 315.8 233 64.8
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 2.7e-84 315.8 226 68.1
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.5e-84 315.5 233 67.4
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 3.5e-84 315.5 233 67.4
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 4.6e-84 315.1 226 64.6
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 4.6e-84 315.1 228 67.5
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 4.6e-84 315.1 228 67.5
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 4.6e-84 315.1 233 67.4
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 4.6e-84 315.1 233 67.0
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 6.0e-84 314.7 226 66.8
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 1.3e-83 313.5 232 66.4
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 1.3e-83 313.5 232 66.4
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 1.3e-83 313.5 232 66.4
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.3e-83 313.5 233 67.0
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 3.0e-83 312.4 233 66.5
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 3.9e-83 312.0 233 65.2
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 6.6e-83 311.2 229 65.5
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 6.6e-83 311.2 233 64.4
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.1e-82 310.5 243 63.8
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.5e-82 310.1 233 65.7
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.9e-82 309.7 233 66.1
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 2.5e-82 309.3 222 68.9
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 2.5e-82 309.3 233 65.7
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 3.3e-82 308.9 225 67.6
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 4.3e-82 308.5 233 64.4
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 4.3e-82 308.5 233 64.4
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 4.3e-82 308.5 233 65.7
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 4.3e-82 308.5 233 65.7
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 5.6e-82 308.1 225 68.0
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 9.5e-82 307.4 226 68.1
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.6e-81 306.6 233 65.2
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 2.1e-81 306.2 233 64.4
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 2.8e-81 305.8 233 64.4
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 2.8e-81 305.8 226 67.3
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 4.7e-81 305.1 226 64.2
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 4.7e-81 305.1 233 63.9
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 6.2e-81 304.7 233 63.1
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 1.1e-80 303.9 226 65.5
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.1e-80 303.9 222 66.7
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.4e-80 303.5 233 64.4
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.4e-80 303.5 233 63.5
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.8e-80 303.1 233 63.9
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 3.1e-80 302.4 225 66.7
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 5.2e-80 301.6 229 64.6
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 8.9e-80 300.8 233 64.4
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 8.9e-80 300.8 233 64.4
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 8.9e-80 300.8 226 64.6
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.5e-79 300.1 228 62.3
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 3.4e-79 298.9 225 66.7
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 4.4e-79 298.5 220 65.5
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 4.4e-79 298.5 220 66.8
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 4.4e-79 298.5 226 65.0
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 5.8e-79 298.1 229 63.8
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 1.3e-78 297.0 222 66.2
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.7e-78 296.6 233 64.8
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 2.2e-78 296.2 233 62.7
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 6.4e-78 294.7 226 65.0
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 8.4e-78 294.3 226 64.6
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 1.1e-77 293.9 226 64.2
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 2.1e-76 289.7 226 62.4
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 6.0e-76 288.1 233 60.1
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 7.8e-76 287.7 225 61.8
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 5.6e-74 281.6 236 62.7
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 1.2e-73 280.4 228 60.5
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.6e-73 280.0 228 61.4
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 6.9e-72 274.6 332 47.3
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 1.3e-70 270.4 218 61.0
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 9.3e-69 264.2 225 57.8
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 1.2e-68 263.8 226 56.6
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 1.6e-68 263.5 230 57.8
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 3.9e-67 258.8 219 55.7
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 2.5e-66 256.1 194 63.9
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 4.3e-66 255.4 170 73.5
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 4.0e-64 248.8 233 55.4
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 6.9e-64 248.1 428 38.3
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 2.2e-62 243.0 215 52.1
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 9.0e-56 221.1 215 51.2
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 3.2e-53 212.6 216 48.1
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 6.0e-52 208.4 117 85.5
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 2.4e-48 196.4 162 59.3
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 5.3e-48 195.3 222 44.1
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 5.1e-43 178.7 124 67.7
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.8e-41 172.9 106 75.5
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 6.3e-41 171.8 102 76.5
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.5e-39 167.2 99 77.8
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.5e-39 167.2 134 61.9
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 6.3e-33 145.2 99 65.7
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 4.7e-28 129.0 134 50.0
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 2.6e-26 123.2 124 54.8
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.3e-25 120.9 232 33.2
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 2.2e-25 120.2 125 55.2
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 2.2e-17 93.6 88 53.4
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 1.4e-16 90.9 92 51.1
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 4.1e-16 89.4 67 65.7
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.2e-10 71.2 77 46.8
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.4e-10 69.3 113 40.7
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 1.0e-06 58.2 47 57.4
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 5.0e-06 55.8 87 32.2


User provided reference genes

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