Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.5e-127 459.5 229 100.0
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 9.0e-109 397.1 229 89.1
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.7e-105 385.6 196 97.4
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 5.1e-104 381.3 196 97.4
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.9e-98 362.8 196 90.3
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.3e-91 340.1 196 84.2
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.7e-91 339.7 190 90.0
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 5.5e-90 334.7 192 84.9
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.2e-82 307.8 192 77.1
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.2e-81 307.0 196 77.6
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 2.1e-81 306.2 196 78.6
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.1e-81 306.2 197 75.1
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 4.7e-81 305.1 192 76.0
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 6.1e-81 304.7 196 78.1
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 6.1e-81 304.7 196 76.0
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.3e-80 302.8 192 74.5
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 2.3e-80 302.8 192 76.6
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 3.0e-80 302.4 190 77.4
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 3.0e-80 302.4 196 75.0
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 3.9e-80 302.0 196 73.5
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 8.8e-80 300.8 192 76.0
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.1e-79 300.4 196 73.0
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 5.7e-79 298.1 196 75.5
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 7.4e-79 297.7 192 74.5
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.2e-78 296.2 196 75.0
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 2.8e-78 295.8 196 72.4
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 2.8e-78 295.8 196 75.5
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 8.2e-78 294.3 190 75.3
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 8.2e-78 294.3 196 73.5
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.4e-77 293.5 196 73.5
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 3.1e-77 292.4 194 74.2
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 3.1e-77 292.4 195 71.3
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 9.1e-77 290.8 194 73.7
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 1.2e-76 290.4 192 71.9
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.5e-76 290.0 190 74.7
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.6e-76 289.3 189 75.7
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 4.5e-76 288.5 189 74.6
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 4.5e-76 288.5 187 75.9
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 5.9e-76 288.1 196 69.9
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 7.7e-76 287.7 196 71.4
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 7.7e-76 287.7 189 73.5
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.3e-75 287.0 203 70.0
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.2e-75 286.2 196 68.9
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 3.8e-75 285.4 188 75.0
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 6.5e-75 284.6 188 72.9
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 1.1e-74 283.9 193 71.5
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.4e-74 283.5 189 73.0
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 3.2e-74 282.3 197 70.1
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 4.2e-74 282.0 224 64.7
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 7.2e-74 281.2 191 72.3
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.6e-73 280.0 189 72.0
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 2.7e-73 279.3 196 70.4
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 2.7e-73 279.3 196 69.9
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 4.7e-73 278.5 193 68.9
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 4.7e-73 278.5 189 72.0
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.7e-73 278.5 190 73.2
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 6.1e-73 278.1 183 74.3
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.1e-73 278.1 189 71.4
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 6.1e-73 278.1 193 69.9
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 8.0e-73 277.7 187 72.7
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 1.0e-72 277.3 183 73.8
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.4e-72 276.9 196 69.4
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 2.3e-72 276.2 193 69.4
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 3.0e-72 275.8 196 70.4
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 3.9e-72 275.4 186 74.7
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.0e-71 273.1 171 76.6
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 3.3e-71 272.3 192 70.3
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 3.3e-71 272.3 193 68.4
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 9.7e-71 270.8 190 68.9
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 9.7e-71 270.8 190 71.1
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 9.7e-71 270.8 198 67.7
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 1.3e-70 270.4 170 74.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 2.2e-70 269.6 188 70.2
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 2.2e-70 269.6 194 70.6
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 3.7e-70 268.9 194 68.0
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.7e-70 268.9 170 77.6
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 8.2e-70 267.7 191 68.6
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.1e-69 267.3 187 69.5
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 1.8e-69 266.5 194 68.0
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 5.3e-69 265.0 185 69.2
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.2e-68 263.8 166 80.1
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 2.0e-68 263.1 165 75.2
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 2.6e-68 262.7 202 65.8
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 2.6e-68 262.7 170 74.7
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 2.6e-68 262.7 190 69.5
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 2.6e-68 262.7 179 71.5
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 7.7e-68 261.2 174 73.0
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 7.7e-68 261.2 179 72.6
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 1.0e-67 260.8 171 76.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.7e-67 260.0 204 64.7
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.8e-67 258.8 188 69.7
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.5e-66 256.9 186 68.8
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 2.5e-66 256.1 166 72.9
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 3.2e-66 255.8 186 66.7
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 7.2e-66 254.6 167 73.7
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 3.0e-64 249.2 167 72.5
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 5.2e-64 248.4 175 71.4
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 8.8e-64 247.7 167 73.7
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.6e-63 246.1 190 65.8
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.7e-63 244.2 170 70.0
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 9.7e-63 244.2 190 61.6
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 9.7e-63 244.2 176 67.0
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.3e-62 243.8 167 69.5
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 2.2e-62 243.0 167 70.7
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.8e-61 240.0 202 56.9
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 3.1e-61 239.2 177 65.5
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 9.1e-61 237.7 193 60.1
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 2.7e-60 236.1 171 69.0
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.2e-59 233.0 161 68.3
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 8.5e-59 231.1 173 65.9
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 1.1e-58 230.7 190 56.8
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.5e-58 228.4 189 62.4
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.2e-57 227.3 196 59.7
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 2.1e-57 226.5 196 59.2
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 2.7e-57 226.1 192 60.9
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 5.2e-56 221.9 187 61.5
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.8e-56 221.5 171 62.6
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 2.6e-55 219.5 142 73.2
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 9.8e-55 217.6 187 59.4
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 2.8e-54 216.1 142 73.9
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 4.8e-54 215.3 187 55.1
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 8.3e-54 214.5 196 56.6
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 6.6e-51 204.9 193 52.8
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 6.1e-49 198.4 133 72.2
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.8e-48 196.8 188 56.4
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.6e-44 183.7 125 71.2
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 2.0e-44 183.3 187 54.5
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 3.5e-44 182.6 117 75.2
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 1.3e-43 180.6 110 80.0
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 5.0e-43 178.7 187 48.1
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.7e-38 163.7 133 57.1
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.2e-38 163.3 171 50.9
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 5.4e-37 158.7 172 53.5
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 4.1e-21 105.9 87 64.4
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 7.6e-15 85.1 52 78.8
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 7.6e-15 85.1 58 63.8
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 1.4e-13 80.9 170 37.1
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 1.2e-12 77.8 60 63.3
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 5.6e-10 68.9 207 28.0
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 5.6e-10 68.9 54 61.1
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 9.6e-10 68.2 207 28.0
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 2.8e-09 66.6 187 27.8
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.8e-08 63.9 170 27.1
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.8e-08 63.9 177 28.8
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.5e-07 60.8 172 28.5
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 2.0e-07 60.5 172 27.9
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 2.6e-07 60.1 171 28.7
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 2.6e-07 60.1 171 28.7
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 3.4e-07 59.7 178 29.2
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 4.4e-07 59.3 183 29.0
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 4.4e-07 59.3 167 28.7
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 5.8e-07 58.9 173 27.2
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 7.6e-07 58.5 180 29.4
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 7.6e-07 58.5 178 27.5
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 7.6e-07 58.5 194 29.9
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 7.6e-07 58.5 173 27.7
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 9.9e-07 58.2 175 28.6
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 9.9e-07 58.2 175 27.4
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.3e-06 57.8 184 27.2
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 1.3e-06 57.8 196 27.6
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.7e-06 57.4 180 27.8
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.9e-06 56.6 175 28.0
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 2.9e-06 56.6 187 25.1
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 3.8e-06 56.2 175 24.6
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 6.4e-06 55.5 175 26.9
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 6.4e-06 55.5 175 26.9
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 6.4e-06 55.5 171 26.9
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 6.4e-06 55.5 172 27.3


User provided reference genes

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