Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2483 Fragaria x ananassa HOM05D005891 ORTHO05D007214 8.2e-54 213.4 102 100.0
FAN05G1661 Fragaria x ananassa HOM05D005891 ORTHO05D007214 3.1e-53 211.5 102 99.0
FAN05G3805 Fragaria x ananassa HOM05D005891 ORTHO05D007214 3.1e-53 211.5 102 99.0
FvH4_6g24900 Fragaria vesca HOM05D005891 ORTHO05D007214 2.2e-51 205.3 102 97.1
FAN14G5310 Fragaria x ananassa HOM05D005891 ORTHO05D007214 8.5e-51 203.4 102 96.1
RcHm_v2.0_Chr2g0124601 Rosa chinensis HOM05D005891 ORTHO05D007214 3.7e-46 188.0 102 86.3
Prupe.4G274500 Prunus persica HOM05D005891 ORTHO05D007214 5.3e-37 157.5 100 71.0
MD14G1081800 Malus domestica HOM05D005891 ORTHO05D007214 9.1e-37 156.8 102 69.6
MD12G1089200 Malus domestica HOM05D005891 ORTHO05D007214 1.5e-34 149.4 100 69.0
CANSAT80G2643 Cannabis sativa HOM05D005891 ORTHO05D007214 2.3e-24 115.5 97 54.6
CANSAT80G2523 Cannabis sativa HOM05D005891 ORTHO05D007214 8.9e-24 113.6 95 54.7
Cfa016743 Carpinus fangiana HOM05D005891 ORTHO05D007214 5.7e-23 110.9 103 48.5
Rhsim03G0031400 Rhododendron simsii HOM05D005891 ORTHO05D007214 2.2e-22 109.0 97 51.5
Ciclev10025261m.g Citrus clementina HOM05D005891 ORTHO05D007214 3.7e-22 108.2 99 52.5
GSVIVG01033562001 Vitis vinifera HOM05D005891 ORTHO05D007214 3.7e-22 108.2 100 49.0
Atru.chr11.2650 Acer truncatum HOM05D005891 ORTHO05D007214 6.3e-22 107.5 88 55.7
Actinidia09292 Actinidia chinensis HOM05D005891 ORTHO05D007214 6.3e-22 107.5 87 55.2
Lj1g0021626 Lotus japonicus HOM05D005891 ORTHO05D007214 1.1e-21 106.7 90 50.0
Actinidia39186 Actinidia chinensis HOM05D005891 ORTHO05D007214 1.4e-21 106.3 98 51.0
Oeu015292.1 Olea europaea HOM05D005891 ORTHO05D007214 1.8e-21 105.9 97 46.4
Haze_19761 Corylus avellana HOM05D005891 ORTHO05D007214 2.4e-21 105.5 103 47.6
TAR633G2073 Trochodendron aralioides HOM05D005891 ORTHO05D007214 2.4e-21 105.5 98 51.0
QL07p004892 Quercus lobata HOM05D005891 ORTHO05D007214 4.1e-21 104.8 85 54.1
Potri.006G044500 Populus trichocarpa HOM05D005891 ORTHO05D007214 7.0e-21 104.0 90 53.3
Gorai.006G219000 Gossypium raimondii HOM05D005891 ORTHO05D007214 9.2e-21 103.6 96 45.8
TWI53G1500 Tripterygium wilfordii HOM05D005891 ORTHO05D007214 1.6e-20 102.8 99 48.5
ClCG04G004100 Citrullus lanatus HOM05D005891 ORTHO05D007214 2.0e-20 102.4 98 45.9
CSS0027694 Camellia sinensis var. sinensis HOM05D005891 ORTHO05D007214 3.5e-20 101.7 80 56.2
Lalb_Chr20g0110281 Lupinus albus HOM05D005891 ORTHO05D007214 4.5e-20 101.3 90 48.9
PGR031G3404 Punica granatum HOM05D005891 ORTHO05D007214 4.5e-20 101.3 83 53.0
Ciclev10031083m.g Citrus clementina HOM05D005891 ORTHO05D007214 5.9e-20 100.9 97 50.5
Gohir.A09G201700 Gossypium hirsutum HOM05D005891 ORTHO05D007214 7.8e-20 100.5 96 44.8
COL.COLO4_20863 Corchorus olitorius HOM05D005891 ORTHO05D007214 1.0e-19 100.1 100 46.0
Manes.09G010000 Manihot esculenta HOM05D005891 ORTHO05D007214 1.0e-19 100.1 90 50.0
CiPaw.09G043200 Carya illinoinensis HOM05D005891 ORTHO05D007214 1.7e-19 99.4 103 45.6
Peaxi162Scf00130g01129 Petunia axillaris HOM05D005891 ORTHO05D007214 1.7e-19 99.4 82 56.1
Duzib212G0478 Durio zibethinus HOM05D005891 ORTHO05D007214 5.0e-19 97.8 96 43.8
Hma1.2p1_0275F.1_g110840 Hydrangea macrophylla HOM05D005891 ORTHO05D007214 5.0e-19 97.8 87 48.3
Psat3g075960 Pisum sativum HOM05D005891 ORTHO05D007214 5.0e-19 97.8 92 44.6
PGSC0003DMG402007625 Solanum tuberosum HOM05D005891 ORTHO05D007214 6.6e-19 97.4 89 49.4
Nn7g36464 Nelumbo nucifera HOM05D005891 ORTHO05D007214 8.6e-19 97.1 88 47.7
TPR.G32752 Trifolium pratense HOM05D005891 ORTHO05D007214 8.6e-19 97.1 90 44.4
arahy.Tifrunner.gnm1.ann1.324ZN3 Arachis hypogaea HOM05D005891 ORTHO05D007214 1.1e-18 96.7 90 45.6
arahy.Tifrunner.gnm1.ann1.68N1MV Arachis hypogaea HOM05D005891 ORTHO05D007214 1.1e-18 96.7 90 45.6
Thhalv10005871m.g Eutrema salsugineum HOM05D005891 ORTHO05D007214 1.1e-18 96.7 94 50.0
VMungo1383G0485 Vigna mungo HOM05D005891 ORTHO05D007214 1.1e-18 96.7 90 45.6
CsaV3_4G022060 Cucumis sativus L. HOM05D005891 ORTHO05D007214 1.9e-18 95.9 100 44.0
THA.LOC104824423 Tarenaya hassleriana HOM05D005891 ORTHO05D007214 1.9e-18 95.9 92 44.6
CAN.G1237.25 Capsicum annuum HOM05D005891 ORTHO05D007214 2.5e-18 95.5 82 52.4
Nitab4.5_0001618g0090 Nicotiana tabacum HOM05D005891 ORTHO05D007214 2.5e-18 95.5 82 51.2
Sed0000553 Sechium edule HOM05D005891 ORTHO05D007214 2.5e-18 95.5 92 46.7
A09p50110 Brassica napus HOM05D005891 ORTHO05D007214 3.3e-18 95.1 92 48.9
BraA09t40462Z Brassica rapa HOM05D005891 ORTHO05D007214 3.3e-18 95.1 92 48.9
Carub.0005s2399 Capsella rubella HOM05D005891 ORTHO05D007214 3.3e-18 95.1 93 47.3
CARHR119890 Cardamine hirsuta HOM05D005891 ORTHO05D007214 3.3e-18 95.1 85 51.8
C08p32480 Brassica napus HOM05D005891 ORTHO05D007214 4.3e-18 94.7 92 48.9
BolC8t50864H Brassica oleracea HOM05D005891 ORTHO05D007214 4.3e-18 94.7 92 48.9
Nitab4.5_0008674g0030 Nicotiana tabacum HOM05D005891 ORTHO05D007214 4.3e-18 94.7 98 45.9
Duzib151G0628 Durio zibethinus HOM05D005891 ORTHO05D007214 5.6e-18 94.4 96 42.7
Medtr7g090600 Medicago truncatula HOM05D005891 ORTHO05D007214 5.6e-18 94.4 90 43.3
Phvul.001G127800 Phaseolus vulgaris HOM05D005891 ORTHO05D007214 5.6e-18 94.4 90 44.4
MELO3C014212.2 Cucumis melo HOM05D005891 ORTHO05D007214 7.3e-18 94.0 100 45.0
Actinidia39189 Actinidia chinensis HOM05D005891 ORTHO05D007214 9.5e-18 93.6 98 45.9
Solyc04g017700.4 Solanum lycopersicum HOM05D005891 ORTHO05D007214 9.5e-18 93.6 82 51.2
Sopen04g008780 Solanum pennellii HOM05D005891 ORTHO05D007214 9.5e-18 93.6 82 51.2
Ca_08420_v3 Cicer arietinum L. HOM05D005891 ORTHO05D007214 1.2e-17 93.2 90 44.4
AT3G57170 Arabidopsis thaliana HOM05D005891 ORTHO05D007214 2.8e-17 92.0 85 50.6
Thecc.04G215900 Theobroma cacao HOM05D005891 ORTHO05D007214 3.6e-17 91.7 96 42.7
TWI74G1459 Tripterygium wilfordii HOM05D005891 ORTHO05D007214 4.7e-17 91.3 99 44.4
AL5G38660 Arabidopsis lyrata HOM05D005891 ORTHO05D007214 6.1e-17 90.9 79 51.9
Glyma.03G131800 Glycine max HOM05D005891 ORTHO05D007214 8.0e-17 90.5 90 44.4
Sp5g05400 Schrenkiella parvula HOM05D005891 ORTHO05D007214 1.4e-16 89.7 82 51.2
Glyma.18G212600 Glycine max HOM05D005891 ORTHO05D007214 2.3e-16 89.0 90 43.3
BcaC07g40068 Brassica carinata HOM05D005891 ORTHO05D007214 3.0e-16 88.6 79 51.9
Cc06_g18470 Coffea canephora HOM05D005891 ORTHO05D007214 6.8e-16 87.4 86 46.5
Sc19g0008430 Simmondsia chinensis HOM05D005891 ORTHO05D007214 6.8e-16 87.4 82 45.1
Aqoxy7G02967 Aquilegia oxysepala HOM05D005891 ORTHO05D007214 2.6e-15 85.5 100 41.0
PSO063G0854 Papaver somniferum HOM05D005891 ORTHO05D007214 2.6e-15 85.5 93 41.9
PSO170G1429 Papaver somniferum HOM05D005891 ORTHO05D007214 3.4e-15 85.1 80 48.8
Hund19119 Selenicereus undatus HOM05D005891 ORTHO05D007214 4.4e-15 84.7 99 38.4
Eucgr.A02290 Eucalyptus grandis HOM05D005891 ORTHO05D007214 2.9e-14 82.0 91 44.0
ATR0580G208 Amborella trichopoda HOM05D005891 ORTHO05D007214 1.4e-13 79.7 77 50.6
DCAR_002883 Daucus carota HOM05D005891 ORTHO05D007214 1.8e-13 79.3 82 42.7
EL10Ac3g07174 Beta vulgaris HOM05D005891 ORTHO05D007214 2.4e-13 79.0 95 36.8
Os05g0290300 Oryza sativa ssp. japonica HOM05D005891 ORTHO05D007214 1.6e-12 76.3 89 36.0
Actinidia39187 Actinidia chinensis HOM05D005891 ORTHO05D007214 2.7e-12 75.5 67 53.7
vmacro20338 Vaccinium macrocarpon HOM05D005891 ORTHO05D007214 4.6e-12 74.7 84 44.0
Ah.13g076700 Amaranthus hybridus HOM05D005891 ORTHO05D007214 2.3e-11 72.4 94 35.1
SalBow4G2335 Salvia bowleyana HOM05D005891 ORTHO05D007214 3.0e-11 72.0 107 33.6
Cpa.g.sc66.72 Carica papaya HOM05D005891 ORTHO05D007214 5.0e-11 71.2 69 53.6
Migut.K00113 Erythranthe guttata HOM05D005891 ORTHO05D007214 6.2e-09 64.3 98 31.6
Lsat_1_v5_gn_3_23040 Lactuca sativa HOM05D005891 ORTHO05D007214 8.0e-09 63.9 96 34.4
BcaC07g40040 Brassica carinata HOM05D005891 ORTHO05D007214 2.6e-07 58.9 56 50.0
Nn2g15043 Nelumbo nucifera HOM05D005891 ORTHO05D007214 2.2e-06 55.8 77 36.4
MD07G1151500 Malus domestica HOM05D005891 ORTHO05D007214 4.9e-06 54.7 117 29.1
SEGI_09087 Sequoiadendron giganteum HOM05D005891 ORTHO05D007214 4.9e-06 54.7 73 38.4
Aa31LG10G12080 Aethionema arabicum HOM05D005891 ORTHO05D007214 8.3e-06 53.9 54 48.1


User provided reference genes

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