Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2363 Fragaria x ananassa HOM05D012632 ORTHO05D016311 8.4e-196 686.8 338 100.0
FvH4_6g36030 Fragaria vesca HOM05D012632 ORTHO05D016311 6.5e-180 634.0 336 92.3
FAN09G2830 Fragaria x ananassa HOM05D012632 ORTHO05D016311 3.1e-142 508.8 338 75.4
FAN14G0957 Fragaria x ananassa HOM05D012632 ORTHO05D016311 8.8e-129 464.2 338 71.3
RcHm_v2.0_Chr2g0143301 Rosa chinensis HOM05D012632 ORTHO05D016311 9.2e-126 454.1 344 69.5
RcHm_v2.0_Chr2g0143241 Rosa chinensis HOM05D012632 ORTHO05D016311 1.6e-125 453.4 344 68.9
FAN14G1479 Fragaria x ananassa HOM05D012632 ORTHO05D016311 2.1e-98 363.2 229 78.6
RcHm_v2.0_Chr6g0253161 Rosa chinensis HOM05D012632 ORTHO05D016311 7.4e-75 285.0 232 60.3
FAN09G3107 Fragaria x ananassa HOM05D012632 ORTHO05D016311 3.8e-71 272.7 252 61.1
FAN09G2881 Fragaria x ananassa HOM05D012632 ORTHO05D016311 1.6e-24 117.9 76 80.3
MD17G1149700 Malus domestica HOM05D012632 ORTHO05D016311 4.7e-21 106.3 185 39.5
MBI13_g00895_MAGBIO Magnolia biondii HOM05D000519 ORTHO05D001210 5.9e-16 89.4 232 29.7
RcHm_v2.0_Chr2g0143271 Rosa chinensis HOM05D019908 ORTHO05D013079 2.5e-14 84.0 183 38.3
FvH4_3g43010 Fragaria vesca HOM05D013833 ORTHO05D013079 6.1e-13 79.3 174 35.6
RcHm_v2.0_Chr6g0253151 Rosa chinensis HOM05D013833 ORTHO05D013079 6.1e-13 79.3 112 45.5
FvH4_3g43011 Fragaria vesca HOM05D013833 ORTHO05D013079 2.3e-12 77.4 171 36.8
FAN16G3708 Fragaria x ananassa HOM05D013833 ORTHO05D013079 2.3e-12 77.4 171 36.8
Sopen06g029960 Solanum pennellii HOM05D000519 ORTHO05D019510 4.0e-12 76.6 202 29.7
Prupe.6G034400 Prunus persica HOM05D042542 ORTHO05D013079 5.2e-12 76.3 171 38.0
RcHm_v2.0_Chr7g0231321 Rosa chinensis HOM05D012632 ORTHO05D348521 5.2e-12 76.3 111 41.4
FAN17G1753 Fragaria x ananassa HOM05D013833 ORTHO05D013079 8.9e-12 75.5 187 35.3
FvH4_6g36040 Fragaria vesca HOM05D019908 ORTHO05D013079 7.5e-11 72.4 159 35.8
FAN09G0122 Fragaria x ananassa HOM05D019908 ORTHO05D013079 1.3e-10 71.6 89 53.9
Sopen06g029970 Solanum pennellii HOM05D000519 ORTHO05D019510 1.3e-10 71.6 204 28.4
FAN21G3813 Fragaria x ananassa HOM05D013833 ORTHO05D013079 1.7e-10 71.2 169 34.9
HanXRQChr03g0091631 Helianthus annuus HOM05D000519 ORTHO05D001210 4.9e-10 69.7 194 27.8
PGSC0003DMG400005921 Solanum tuberosum HOM05D000519 ORTHO05D019510 1.1e-09 68.6 204 27.0
Glyma.14G038300 Glycine max HOM05D000519 ORTHO05D001210 1.8e-09 67.8 202 28.7
PGSC0003DMG400005950 Solanum tuberosum HOM05D000519 ORTHO05D019510 1.8e-09 67.8 202 25.7
FAN11G1906 Fragaria x ananassa HOM05D013833 ORTHO05D013079 5.4e-09 66.2 141 36.9
Solyc06g073587.1 Solanum lycopersicum HOM05D000519 ORTHO05D019510 7.0e-09 65.9 199 28.1
Solyc06g150133.1 Solanum lycopersicum HOM05D000519 ORTHO05D019510 7.0e-09 65.9 199 28.1
Aqoxy5G01464 Aquilegia oxysepala HOM05D012438 ORTHO05D012575 1.7e-07 61.2 102 44.1
FAN17G0681 Fragaria x ananassa HOM05D012438 ORTHO05D012575 1.1e-06 58.5 79 46.8
Dinv36278 Davidia involucrata HOM05D000519 ORTHO05D001210 1.5e-06 58.2 78 48.7
MD15G1382700 Malus domestica HOM05D012438 ORTHO05D012575 1.9e-06 57.8 83 43.4
MD17G1149600 Malus domestica HOM05D012438 ORTHO05D012575 1.9e-06 57.8 208 30.8
Ciclev10012693m.g Citrus clementina HOM05D000519 ORTHO05D001210 2.5e-06 57.4 74 43.2
MD02G1275000 Malus domestica HOM05D000519 ORTHO05D001210 2.5e-06 57.4 119 33.6
PGR042G2892 Punica granatum HOM05D000519 ORTHO05D001210 2.5e-06 57.4 58 50.0
Ciclev10002346m.g Citrus clementina HOM05D000519 ORTHO05D001210 3.3e-06 57.0 58 48.3
FAN02G3219 Fragaria x ananassa HOM05D022329 ORTHO05D012575 3.3e-06 57.0 115 35.7
Hma1.2p1_0233F.1_g098160 Hydrangea macrophylla HOM05D000519 ORTHO05D001210 3.3e-06 57.0 58 50.0
Eucgr.A02187 Eucalyptus grandis HOM05D000519 ORTHO05D001210 4.3e-06 56.6 58 51.7
Eucgr.A02189 Eucalyptus grandis HOM05D000519 ORTHO05D001210 4.3e-06 56.6 58 51.7
FAN09G3544 Fragaria x ananassa HOM05D022329 ORTHO05D012575 4.3e-06 56.6 55 56.4
MD03G1041000 Malus domestica HOM05D052476 ORTHO05D248543 4.3e-06 56.6 64 46.9
Psat3g081960 Pisum sativum HOM05D000519 ORTHO05D001210 4.3e-06 56.6 153 27.5
TWI53G0432 Tripterygium wilfordii HOM05D000519 ORTHO05D001210 4.3e-06 56.6 58 48.3
CSS0008725 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 5.6e-06 56.2 58 51.7
CSS0026186 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 5.6e-06 56.2 58 51.7
CSS0039548 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D001210 5.6e-06 56.2 58 51.7
CiPaw.14G010700 Carya illinoinensis HOM05D000519 ORTHO05D001210 5.6e-06 56.2 65 47.7
Glyma.14G038500 Glycine max HOM05D000519 ORTHO05D001210 5.6e-06 56.2 202 25.2
Nn2g14598 Nelumbo nucifera HOM05D000519 ORTHO05D001210 5.6e-06 56.2 89 38.2
HPP92_012548 Vanilla planifolia HOM05D000519 ORTHO05D001210 5.6e-06 56.2 60 48.3
Atru.chr1.1313 Acer truncatum HOM05D000519 ORTHO05D001210 7.3e-06 55.8 96 35.4
Atru.chr1.1314 Acer truncatum HOM05D000519 ORTHO05D001210 7.3e-06 55.8 96 35.4
CiPaw.13G017000 Carya illinoinensis HOM05D000519 ORTHO05D001210 7.3e-06 55.8 58 48.3
AUR62032567 Chenopodium quinoa HOM05D000519 ORTHO05D001210 7.3e-06 55.8 58 50.0
MBI19_g39142_MAGBIO Magnolia biondii HOM05D000519 ORTHO05D001210 7.3e-06 55.8 60 50.0
QL04p021809 Quercus lobata HOM05D000519 ORTHO05D001210 7.3e-06 55.8 58 50.0
Sed0025076 Sechium edule HOM05D000519 ORTHO05D001210 7.3e-06 55.8 60 50.0
ATR0307G050 Amborella trichopoda HOM05D000519 ORTHO05D001210 9.5e-06 55.5 58 48.3
Cpa.g.sc228.9 Carica papaya HOM05D000519 ORTHO05D001210 9.5e-06 55.5 60 46.7
TAR623G0619 Trochodendron aralioides HOM05D000519 ORTHO05D001210 9.5e-06 55.5 58 50.0


User provided reference genes

Program Settings