Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.0e-41 171.4 85 100.0
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.9e-30 133.7 87 83.9
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.6e-29 131.7 87 82.8
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.6e-29 131.7 87 82.8
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.4e-29 131.3 73 94.5
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 2.5e-24 115.2 75 81.3
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.4e-24 113.6 71 84.5
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.6e-24 113.2 71 84.5
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.6e-23 112.5 71 84.5
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.8e-23 111.7 73 80.8
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 6.2e-23 110.5 71 83.1
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 2.6e-21 105.1 76 72.4
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.6e-21 105.1 76 72.4
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.3e-20 102.8 75 77.3
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 8.4e-20 100.1 63 79.4
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.4e-19 99.4 68 72.1
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.9e-19 99.0 87 60.9
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 5.5e-19 97.4 83 62.7
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 7.1e-19 97.1 87 60.9
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.2e-18 96.3 87 59.8
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-18 96.3 82 63.4
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-18 95.9 62 83.9
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.5e-18 94.7 66 68.2
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 3.5e-18 94.7 79 62.0
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-18 94.4 68 69.1
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 6.0e-18 94.0 87 60.9
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 6.0e-18 94.0 70 72.9
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 6.0e-18 94.0 75 66.7
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 7.9e-18 93.6 74 68.9
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 7.9e-18 93.6 74 68.9
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 7.9e-18 93.6 74 68.9
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.0e-17 93.2 77 61.0
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.0e-17 93.2 65 67.7
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.0e-17 93.2 82 61.0
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.3e-17 92.8 85 57.6
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.3e-17 92.8 75 68.0
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.3e-17 92.8 75 70.7
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 1.8e-17 92.4 68 67.6
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-17 92.4 68 67.6
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.8e-17 92.4 87 57.5
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 3.0e-17 91.7 86 58.1
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 3.9e-17 91.3 85 60.0
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 5.1e-17 90.9 74 66.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.7e-17 90.5 68 64.7
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.7e-17 90.5 68 64.7
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 6.7e-17 90.5 84 54.8
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 6.7e-17 90.5 82 58.5
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 8.7e-17 90.1 69 68.1
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.7e-17 90.1 82 59.8
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 1.1e-16 89.7 66 68.2
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.1e-16 89.7 69 66.7
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.1e-16 89.7 69 66.7
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.5e-16 89.4 86 55.8
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.5e-16 89.4 69 63.8
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.5e-16 89.4 84 56.0
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.5e-16 89.4 82 59.8
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-16 89.4 71 69.0
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.5e-16 89.4 79 62.0
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.5e-16 89.4 65 69.2
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.9e-16 89.0 83 57.8
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.9e-16 89.0 65 69.2
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.9e-16 89.0 71 66.2
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.5e-16 88.6 64 65.6
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.5e-16 88.6 64 64.1
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 2.5e-16 88.6 65 69.2
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.3e-16 88.2 82 58.5
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 3.3e-16 88.2 70 70.0
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 4.3e-16 87.8 67 65.7
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 4.3e-16 87.8 81 60.5
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 4.3e-16 87.8 86 61.6
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 4.3e-16 87.8 67 67.2
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 4.3e-16 87.8 82 59.8
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 5.7e-16 87.4 65 67.7
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 5.7e-16 87.4 85 57.6
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 5.7e-16 87.4 87 56.3
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 5.7e-16 87.4 65 69.2
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 7.4e-16 87.0 82 57.3
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 7.4e-16 87.0 88 55.7
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 7.4e-16 87.0 64 70.3
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 7.4e-16 87.0 84 57.1
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 9.7e-16 86.7 84 56.0
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 9.7e-16 86.7 58 74.1
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 9.7e-16 86.7 67 68.7
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 9.7e-16 86.7 65 66.2
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.6e-15 85.9 90 52.2
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.6e-15 85.9 70 61.4
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.6e-15 85.9 65 67.7
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.6e-15 85.9 65 66.2
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.6e-15 85.9 83 57.8
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.6e-15 85.9 67 65.7
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 2.2e-15 85.5 65 63.1
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 2.2e-15 85.5 65 63.1
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 2.2e-15 85.5 65 66.2
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 2.2e-15 85.5 65 66.2
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 2.2e-15 85.5 63 66.7
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 2.2e-15 85.5 78 59.0
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.8e-15 85.1 71 62.0
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.7e-15 84.7 82 56.1
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 6.3e-15 84.0 67 59.7
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 6.3e-15 84.0 66 62.1
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 6.3e-15 84.0 65 64.6
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 8.2e-15 83.6 91 52.7
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 1.1e-14 83.2 91 52.7
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 1.1e-14 83.2 64 64.1
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.1e-14 83.2 68 60.3
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.4e-14 82.8 97 51.5
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.4e-14 82.8 82 53.7
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.4e-14 82.8 68 58.8
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.8e-14 82.4 71 59.2
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 2.4e-14 82.0 65 64.6
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.1e-14 81.6 67 59.7
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 3.1e-14 81.6 91 51.6
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.1e-14 81.6 74 59.5
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 3.1e-14 81.6 91 51.6
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.1e-14 81.6 77 54.5
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 3.1e-14 81.6 67 64.2
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 3.1e-14 81.6 60 68.3
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 3.1e-14 81.6 74 62.2
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 4.1e-14 81.3 83 53.0
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 4.1e-14 81.3 64 57.8
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 4.1e-14 81.3 64 57.8
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 5.3e-14 80.9 65 60.0
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 5.3e-14 80.9 70 60.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 6.9e-14 80.5 68 61.8
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 6.9e-14 80.5 46 93.5
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.2e-13 79.7 67 59.7
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.2e-13 79.7 67 59.7
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 1.5e-13 79.3 96 50.0
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.5e-13 79.3 60 66.7
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 2.0e-13 79.0 64 57.8
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.0e-13 79.0 65 60.0
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 2.0e-13 79.0 60 71.7
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.6e-13 78.6 63 58.7
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 3.4e-13 78.2 80 56.2
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 4.5e-13 77.8 63 60.3
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.0e-12 76.6 86 51.2
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.0e-12 76.6 65 56.9
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.0e-12 76.6 69 53.6
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.0e-12 76.6 82 53.7
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 2.2e-12 75.5 55 67.3
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 5.0e-12 74.3 69 60.9
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.9e-11 72.4 74 55.4
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.5e-11 72.0 69 59.4
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 4.2e-11 71.2 123 41.5
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.2e-11 71.2 65 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 5.5e-11 70.9 61 57.4
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 7.2e-11 70.5 65 55.4
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.2e-11 70.5 62 59.7
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.2e-10 69.7 65 55.4
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.1e-10 68.9 73 53.4
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 1.8e-09 65.9 58 56.9
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 3.0e-09 65.1 64 57.8
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.2e-07 58.9 44 59.1
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.4e-06 56.2 40 77.5


User provided reference genes

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