Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.0e-57 224.2 109 100.0
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 6.3e-52 207.2 102 98.0
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.1e-51 206.5 101 99.0
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.4e-51 206.1 100 100.0
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 1.8e-51 205.7 102 97.1
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.8e-51 205.7 102 97.1
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 5.3e-51 204.1 102 96.1
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 6.9e-51 203.8 100 99.0
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 7.7e-50 200.3 102 94.1
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.3e-49 199.5 102 94.1
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 3.8e-49 198.0 102 92.2
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.0e-49 197.6 97 99.0
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 3.6e-47 191.4 102 89.2
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 3.6e-47 191.4 102 88.2
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 4.7e-47 191.0 102 89.2
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 4.7e-47 191.0 101 89.1
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 4.7e-47 191.0 102 87.3
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 1.0e-46 189.9 102 87.3
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 1.4e-46 189.5 102 88.2
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 1.8e-46 189.1 100 88.0
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 3.0e-46 188.3 102 87.3
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 3.0e-46 188.3 102 87.3
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 5.2e-46 187.6 102 87.3
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 1.5e-45 186.0 100 86.0
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 1.5e-45 186.0 102 86.3
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 2.0e-45 185.7 102 85.3
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 2.0e-45 185.7 102 85.3
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 4.4e-45 184.5 102 85.3
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 5.7e-45 184.1 100 85.0
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 5.7e-45 184.1 102 85.3
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 9.7e-45 183.3 102 85.3
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 9.7e-45 183.3 100 86.0
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 1.3e-44 183.0 102 85.3
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 1.7e-44 182.6 102 85.3
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.7e-44 182.6 102 85.3
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.7e-44 182.6 102 85.3
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 2.2e-44 182.2 100 86.0
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 2.8e-44 181.8 102 86.3
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 2.8e-44 181.8 102 86.3
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 3.7e-44 181.4 102 82.4
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 3.7e-44 181.4 100 84.0
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 4.8e-44 181.0 100 84.0
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 4.8e-44 181.0 102 84.3
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 8.2e-44 180.3 102 85.3
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 8.2e-44 180.3 102 85.3
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 8.2e-44 180.3 103 83.5
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 1.1e-43 179.9 102 84.3
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 1.1e-43 179.9 101 86.1
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 1.4e-43 179.5 102 81.4
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 1.4e-43 179.5 102 84.3
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 1.4e-43 179.5 102 83.3
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 1.8e-43 179.1 102 80.4
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 1.8e-43 179.1 102 81.4
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 1.8e-43 179.1 102 81.4
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 1.8e-43 179.1 100 84.0
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 1.8e-43 179.1 102 83.3
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 2.4e-43 178.7 102 84.3
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 2.4e-43 178.7 100 84.0
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 3.1e-43 178.3 102 82.4
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 3.1e-43 178.3 102 80.4
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 3.1e-43 178.3 102 80.4
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 3.1e-43 178.3 99 83.8
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 3.1e-43 178.3 98 84.7
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 4.1e-43 177.9 102 80.4
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 4.1e-43 177.9 102 81.4
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 4.1e-43 177.9 102 79.4
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 5.3e-43 177.6 100 83.0
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 7.0e-43 177.2 100 82.0
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 7.0e-43 177.2 102 82.4
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 7.0e-43 177.2 102 82.4
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 7.0e-43 177.2 102 83.3
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 7.0e-43 177.2 102 83.3
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 7.0e-43 177.2 100 81.0
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 9.1e-43 176.8 100 83.0
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 9.1e-43 176.8 102 83.3
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 9.1e-43 176.8 102 83.3
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 9.1e-43 176.8 102 82.4
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 1.2e-42 176.4 99 83.8
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 1.2e-42 176.4 103 81.6
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 1.2e-42 176.4 102 82.4
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 1.6e-42 176.0 102 82.4
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.6e-42 176.0 102 84.3
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 2.0e-42 175.6 100 81.0
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 2.6e-42 175.3 100 81.0
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 2.6e-42 175.3 100 82.0
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 3.5e-42 174.9 100 80.0
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 3.5e-42 174.9 100 81.0
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 4.5e-42 174.5 102 79.4
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 4.5e-42 174.5 102 79.4
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 4.5e-42 174.5 102 81.4
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 4.5e-42 174.5 102 81.4
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 5.9e-42 174.1 102 78.4
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 5.9e-42 174.1 102 78.4
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 5.9e-42 174.1 99 81.8
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 7.7e-42 173.7 102 78.4
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 7.7e-42 173.7 98 82.7
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 1.0e-41 173.3 102 78.4
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 1.0e-41 173.3 100 81.0
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 1.0e-41 173.3 102 80.4
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 1.3e-41 172.9 99 82.8
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.3e-41 172.9 97 83.5
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.3e-41 172.9 97 83.5
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 1.7e-41 172.6 90 86.7
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 2.2e-41 172.2 97 82.5
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 2.2e-41 172.2 97 82.5
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 2.2e-41 172.2 100 81.0
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 2.9e-41 171.8 102 77.5
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 2.9e-41 171.8 102 77.5
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 3.8e-41 171.4 99 79.8
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.1e-40 169.9 99 78.8
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 1.5e-40 169.5 97 79.4
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 1.9e-40 169.1 102 77.5
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 2.5e-40 168.7 100 80.0
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 1.2e-39 166.4 97 81.4
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 2.1e-39 165.6 101 78.2
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 2.1e-39 165.6 101 76.2
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 4.7e-39 164.5 99 74.7
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 1.5e-37 159.5 100 73.0
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 7.5e-37 157.1 99 72.7
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 1.3e-36 156.4 95 73.7
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.7e-36 156.0 99 74.7
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 1.4e-35 152.9 102 69.6
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 7.0e-35 150.6 95 70.5
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 9.1e-35 150.2 101 67.3
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 3.5e-34 148.3 102 65.7
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 4.5e-34 147.9 101 66.3
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 2.7e-31 138.7 76 85.5
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.4e-29 131.7 97 74.2
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 8.3e-28 127.1 94 58.5
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.9e-25 118.6 61 85.2
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 2.8e-23 112.1 98 55.1
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 8.9e-22 107.1 95 53.7
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 2.9e-17 92.0 105 49.5
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.1e-16 90.1 42 95.2
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 3.6e-15 85.1 104 42.3
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 7.0e-11 70.9 40 87.5


User provided reference genes

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