Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.9e-172 607.4 306 100.0
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 2.3e-160 568.9 306 95.1
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.7e-160 567.4 306 94.8
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.4e-159 564.7 306 94.1
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 6.1e-153 544.3 305 91.5
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.2e-140 503.4 307 84.4
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 3.5e-140 501.9 305 83.9
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 3.2e-138 495.4 306 82.4
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 3.1e-133 478.8 308 80.8
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 5.4e-133 478.0 313 79.6
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 9.5e-130 467.2 313 78.0
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 3.6e-129 465.3 309 78.6
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.3e-128 462.6 312 76.6
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 3.0e-128 462.2 311 78.5
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 6.8e-128 461.1 311 77.5
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 8.9e-128 460.7 311 78.5
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.3e-126 456.8 314 76.8
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.7e-126 456.4 313 77.6
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.1e-125 453.8 312 76.9
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.1e-125 453.8 311 76.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.1e-125 452.2 312 76.6
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.2e-124 450.3 312 76.3
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.6e-124 449.9 308 75.6
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 7.8e-124 447.6 313 74.4
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 7.8e-124 447.6 313 76.7
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 2.9e-123 445.7 313 75.4
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 5.0e-123 444.9 313 75.7
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.9e-122 443.0 306 76.5
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.6e-122 441.4 313 75.7
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.2e-121 440.3 323 73.4
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 8.0e-121 437.6 315 75.2
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.8e-120 436.4 306 75.2
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.8e-120 436.4 308 76.6
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.5e-119 433.3 306 74.8
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.6e-119 432.6 311 74.9
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.6e-119 432.6 306 75.5
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 5.8e-119 431.4 303 74.9
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.8e-119 431.4 314 71.3
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 7.5e-119 431.0 312 73.4
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.3e-118 430.3 310 73.5
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.7e-118 429.9 311 74.3
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 4.9e-118 428.3 281 78.6
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 6.4e-118 427.9 285 77.9
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 8.3e-118 427.6 312 74.4
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 8.3e-118 427.6 311 74.0
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.1e-117 427.2 307 73.9
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.9e-117 426.4 307 74.3
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 4.1e-117 425.2 306 73.9
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.1e-117 425.2 307 73.6
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 4.1e-117 425.2 305 74.1
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 7.0e-117 424.5 313 73.8
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.2e-116 423.7 285 77.5
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 1.6e-116 423.3 309 73.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 2.7e-116 422.5 309 73.5
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.7e-116 422.5 304 72.4
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 2.7e-116 422.5 307 74.3
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 4.6e-116 421.8 304 72.7
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 6.0e-116 421.4 316 72.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 7.8e-116 421.0 311 73.0
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 7.8e-116 421.0 315 73.0
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-115 420.2 304 72.0
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.7e-115 419.9 306 73.2
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 3.9e-115 418.7 306 70.9
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.9e-115 418.7 311 70.4
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 6.6e-115 417.9 306 71.9
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 6.6e-115 417.9 281 77.6
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 8.6e-115 417.5 308 71.1
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.9e-114 416.4 347 67.1
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 3.3e-114 415.6 308 73.1
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.3e-114 415.2 305 73.4
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 7.3e-114 414.5 305 72.8
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 9.5e-114 414.1 306 70.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.2e-113 413.7 303 72.9
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-113 413.3 304 71.1
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.1e-113 412.9 304 70.4
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 4.7e-113 411.8 306 74.2
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 4.7e-113 411.8 287 76.3
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 8.0e-113 411.0 306 72.9
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.1e-112 410.6 306 71.9
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-112 410.6 304 70.1
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.8e-112 409.8 300 73.7
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 3.1e-112 409.1 305 72.5
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 3.1e-112 409.1 306 72.2
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 4.0e-112 408.7 309 71.5
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.2e-111 407.1 270 80.0
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.5e-111 406.8 296 73.6
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 7.5e-111 404.4 310 70.6
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.3e-110 403.7 307 70.7
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.3e-110 403.7 296 73.3
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 2.2e-110 402.9 297 74.4
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.9e-109 399.8 315 69.2
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.9e-109 399.8 311 69.1
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 2.4e-109 399.4 258 81.4
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 7.0e-109 397.9 289 72.7
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.2e-108 397.1 309 71.5
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.2e-108 397.1 289 72.3
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-107 394.0 266 78.6
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.7e-107 393.3 304 70.1
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 5.1e-107 391.7 308 70.5
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 3.3e-106 389.0 258 79.1
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 5.6e-106 388.3 274 74.8
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.2e-105 387.1 259 79.2
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.6e-105 386.7 288 73.6
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 2.1e-105 386.3 258 77.9
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 4.7e-105 385.2 313 67.1
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.1e-104 384.0 252 79.0
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 2.3e-104 382.9 311 67.8
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 6.4e-102 374.8 232 83.6
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.1e-101 374.0 256 76.2
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.9e-101 373.2 305 66.2
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.9e-101 373.2 259 77.2
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 7.8e-100 367.9 253 77.1
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.0e-99 367.5 258 75.6
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 3.3e-98 362.5 315 64.4
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-95 354.0 306 65.0
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 2.6e-95 352.8 258 73.6
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 7.8e-92 341.3 300 63.0
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.3e-90 335.5 193 90.7
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-89 334.0 305 62.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.2e-89 334.0 293 63.1
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 6.2e-89 331.6 238 76.5
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 5.8e-87 325.1 307 60.3
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.9e-86 322.8 287 62.0
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 2.3e-83 313.2 250 70.0
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 3.3e-82 309.3 259 65.6
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 4.3e-82 308.9 255 70.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.6e-81 307.0 211 75.4
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.6e-79 299.7 193 78.8
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.3e-78 297.4 229 71.6
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 2.9e-78 296.2 331 50.8
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 3.8e-78 295.8 268 61.6
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 3.5e-76 289.3 322 51.6
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.9e-74 283.5 319 50.2
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 3.8e-70 269.2 285 53.7
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 4.9e-70 268.9 252 59.9
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 6.4e-70 268.5 284 55.3
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.9e-69 266.9 224 62.5
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.6e-68 263.8 193 69.4
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.0e-67 261.2 262 56.1
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.3e-67 260.8 177 79.1
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.1e-66 257.7 191 66.5
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.1e-60 236.9 201 64.2
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.1e-60 235.3 177 68.9
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 7.4e-58 228.4 153 77.1
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.7e-49 199.5 158 69.0
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 8.2e-49 198.4 250 44.4
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 6.9e-48 195.3 143 71.3
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.9e-44 181.8 89 98.9
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.8e-41 173.3 134 73.1
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 5.9e-39 165.6 112 76.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.0e-31 140.6 82 84.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.6e-31 140.2 82 82.9
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 8.0e-28 128.6 64 96.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 4.5e-23 112.8 80 77.5
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 3.4e-18 96.7 89 61.8
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.1e-13 81.6 107 50.5
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 2.3e-11 73.9 48 77.1
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.3e-11 73.9 48 75.0
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 5.9e-07 59.3 63 54.0


User provided reference genes

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