Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2228 Fragaria x ananassa HOM05D007555 ORTHO05D009521 3.7e-88 328.2 165 100.0
FAN05G0792 Fragaria x ananassa HOM05D007555 ORTHO05D009521 3.6e-43 178.7 89 95.5
FvH4_6g14780 Fragaria vesca HOM05D007555 ORTHO05D009521 3.4e-41 172.2 166 60.2
FAN14G0454 Fragaria x ananassa HOM05D007555 ORTHO05D009521 3.4e-41 172.2 166 60.2
FAN09G3476 Fragaria x ananassa HOM05D007555 ORTHO05D009521 9.9e-41 170.6 86 91.9
RcHm_v2.0_Chr3g0468011 Rosa chinensis HOM05D007555 ORTHO05D009521 1.6e-38 163.3 166 56.6
Prupe.6G246000 Prunus persica HOM05D007555 ORTHO05D009521 4.9e-32 141.7 170 48.8
MD12G1131600 Malus domestica HOM05D007555 ORTHO05D009521 9.3e-31 137.5 170 47.1
Nitab4.5_0000643g0170 Nicotiana tabacum HOM05D007555 ORTHO05D009521 2.5e-28 129.4 86 66.3
Nitab4.5_0006252g0040 Nicotiana tabacum HOM05D007555 ORTHO05D009521 2.5e-28 129.4 86 67.4
MSTRG.26743 Avicennia marina HOM05D007555 ORTHO05D009521 3.3e-28 129.0 89 62.9
Potri.006G215300 Populus trichocarpa HOM05D007555 ORTHO05D009521 5.6e-28 128.3 168 42.3
arahy.Tifrunner.gnm1.ann1.UIJ5I4 Arachis hypogaea HOM05D007555 ORTHO05D009521 7.3e-28 127.9 82 64.6
Glyma.13G134800 Glycine max HOM05D007555 ORTHO05D009521 7.3e-28 127.9 87 62.1
Hma1.2p1_0111F.1_g053420 Hydrangea macrophylla HOM05D007555 ORTHO05D009521 7.3e-28 127.9 87 63.2
Lalb_Chr02g0153411 Lupinus albus HOM05D007555 ORTHO05D009521 7.3e-28 127.9 85 64.7
Dinv37229 Davidia involucrata HOM05D007555 ORTHO05D009521 9.6e-28 127.5 89 60.7
Manes.08G000300 Manihot esculenta HOM05D007555 ORTHO05D009521 1.3e-27 127.1 82 65.9
ClCG04G008630 Citrullus lanatus HOM05D007555 ORTHO05D009521 2.1e-27 126.3 87 62.1
Sabra06G0166200 Salix brachista HOM05D007555 ORTHO05D009521 2.8e-27 125.9 86 61.6
Sed0003448 Sechium edule HOM05D007555 ORTHO05D009521 2.8e-27 125.9 87 62.1
Thecc.05G049100 Theobroma cacao HOM05D007555 ORTHO05D009521 2.8e-27 125.9 168 43.5
CAN.G350.37 Capsicum annuum HOM05D007555 ORTHO05D009521 3.6e-27 125.6 86 64.0
Migut.L01641 Erythranthe guttata HOM05D007555 ORTHO05D009521 3.6e-27 125.6 89 60.7
Gohir.D01G207300 Gossypium hirsutum HOM05D007555 ORTHO05D009521 3.6e-27 125.6 88 58.0
Lj5g0027152 Lotus japonicus HOM05D007555 ORTHO05D009521 3.6e-27 125.6 87 62.1
PGR004G0254 Punica granatum HOM05D007555 ORTHO05D009521 3.6e-27 125.6 86 62.8
Ciclev10012844m.g Citrus clementina HOM05D007555 ORTHO05D009521 4.8e-27 125.2 88 61.4
Gohir.A01G218500 Gossypium hirsutum HOM05D007555 ORTHO05D009521 4.8e-27 125.2 88 59.1
Gorai.002G252400 Gossypium raimondii HOM05D007555 ORTHO05D009521 4.8e-27 125.2 88 58.0
SGA_v2.0_scaffold94G28647 Striga asiatica HOM05D007555 ORTHO05D009521 4.8e-27 125.2 86 64.0
vmacro08680 Vaccinium macrocarpon HOM05D007555 ORTHO05D009521 6.2e-27 124.8 89 58.4
HanXRQChr07g0204191 Helianthus annuus HOM05D007555 ORTHO05D009521 1.1e-26 124.0 82 65.9
Nn2g12825 Nelumbo nucifera HOM05D000419 ORTHO05D000692 1.1e-26 124.0 136 45.6
CsaV3_4G024530 Cucumis sativus L. HOM05D007555 ORTHO05D009521 1.8e-26 123.2 85 61.2
Solyc09g006000.3 Solanum lycopersicum HOM05D007555 ORTHO05D009521 2.4e-26 122.9 86 61.6
A10p33000 Brassica napus HOM05D007555 ORTHO05D009521 3.1e-26 122.5 88 59.1
BraA10t45337Z Brassica rapa HOM05D007555 ORTHO05D009521 3.1e-26 122.5 88 59.1
DCAR_017749 Daucus carota HOM05D007555 ORTHO05D009521 3.1e-26 122.5 82 62.2
EL10Ac9g22121 Beta vulgaris HOM05D007555 ORTHO05D009521 5.3e-26 121.7 84 59.5
Haze_20696 Corylus avellana HOM05D007555 ORTHO05D009521 5.3e-26 121.7 125 46.4
Peaxi162Scf00597g00516 Petunia axillaris HOM05D007555 ORTHO05D009521 5.3e-26 121.7 80 66.2
Aqoxy2G01932 Aquilegia oxysepala HOM05D007555 ORTHO05D009521 6.9e-26 121.3 88 56.8
AL6G11950 Arabidopsis lyrata HOM05D007555 ORTHO05D009521 6.9e-26 121.3 88 59.1
PSO384G0825 Papaver somniferum HOM05D007555 ORTHO05D009521 6.9e-26 121.3 86 58.1
Atru.chr8.2503 Acer truncatum HOM05D007555 ORTHO05D009521 9.0e-26 120.9 87 57.5
Actinidia05288 Actinidia chinensis HOM05D007555 ORTHO05D009521 9.0e-26 120.9 88 60.2
Eucgr.A01211 Eucalyptus grandis HOM05D007555 ORTHO05D009521 9.0e-26 120.9 156 44.2
PSO339G2355 Papaver somniferum HOM05D007555 ORTHO05D009521 9.0e-26 120.9 86 58.1
THA.LOC104816299 Tarenaya hassleriana HOM05D007555 ORTHO05D009521 9.0e-26 120.9 98 55.1
TPR.G7549 Trifolium pratense HOM05D007555 ORTHO05D009521 9.0e-26 120.9 87 56.3
ECA238G3221 Erigeron canadensis HOM05D000025 ORTHO05D000040 1.2e-25 120.6 84 59.5
Medtr1g067330 Medicago truncatula HOM05D007555 ORTHO05D009521 1.2e-25 120.6 89 56.2
Hund06478 Selenicereus undatus HOM05D007555 ORTHO05D009521 1.2e-25 120.6 84 57.1
GSVIVG01025579001 Vitis vinifera HOM05D007555 ORTHO05D009521 1.2e-25 120.6 89 59.6
Cc06_g03250 Coffea canephora HOM05D007555 ORTHO05D009521 2.0e-25 119.8 87 57.5
TWI53G2115 Tripterygium wilfordii HOM05D007555 ORTHO05D009521 2.0e-25 119.8 85 56.5
VMungo0720G3150 Vigna mungo HOM05D007555 ORTHO05D009521 2.0e-25 119.8 87 56.3
Aa31LG1G22170 Aethionema arabicum HOM05D007555 ORTHO05D009521 2.6e-25 119.4 88 58.0
BcaC06g32006 Brassica carinata HOM05D007555 ORTHO05D009521 2.6e-25 119.4 88 58.0
AUR62030924 Chenopodium quinoa HOM05D007555 ORTHO05D009521 2.6e-25 119.4 84 58.3
Ah.01g007300 Amaranthus hybridus HOM05D007555 ORTHO05D009521 3.4e-25 119.0 84 58.3
CARHR210660 Cardamine hirsuta HOM05D007555 ORTHO05D009521 3.4e-25 119.0 88 58.0
Thhalv10014815m.g Eutrema salsugineum HOM05D007555 ORTHO05D009521 3.4e-25 119.0 88 59.1
ATR0693G428 Amborella trichopoda HOM05D007555 ORTHO05D009521 4.5e-25 118.6 85 60.0
BolC9t60132H Brassica oleracea HOM05D007555 ORTHO05D009521 4.5e-25 118.6 88 56.8
BcaNung03281 Brassica carinata HOM05D007555 ORTHO05D009521 5.8e-25 118.2 88 56.8
C09p73970 Brassica napus HOM05D007555 ORTHO05D009521 5.8e-25 118.2 88 56.8
AT5G02710 Arabidopsis thaliana HOM05D007555 ORTHO05D009521 7.6e-25 117.9 88 56.8
Carub.0006s0147 Capsella rubella HOM05D007555 ORTHO05D009521 1.3e-24 117.1 88 56.8
Cpa.g.sc114.21 Carica papaya HOM05D007555 ORTHO05D009521 1.7e-24 116.7 154 38.3
MELO3C003085.2 Cucumis melo HOM05D007555 ORTHO05D009521 2.9e-24 115.9 87 58.6
Phvul.007G161000 Phaseolus vulgaris HOM05D007555 ORTHO05D009521 2.9e-24 115.9 87 54.0
Psat6g069400 Pisum sativum HOM05D007555 ORTHO05D009521 3.8e-24 115.5 163 39.3
SEGI_01945 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 8.4e-24 114.4 89 58.4
QL07p045973 Quercus lobata HOM05D007555 ORTHO05D009521 1.1e-23 114.0 164 39.0
arahy.Tifrunner.gnm1.ann1.ASDQ9T Arachis hypogaea HOM05D007555 ORTHO05D009521 1.9e-23 113.2 120 45.8
Lj2P231T24 Lonicera japonica HOM05D007555 ORTHO05D009521 5.4e-23 111.7 69 69.6
CiPaw.09G185700 Carya illinoinensis HOM05D007555 ORTHO05D009521 2.1e-22 109.8 89 51.7
unitig_0.g697 Utricularia gibba HOM05D000139 ORTHO05D009521 7.9e-22 107.8 69 66.7
Zm00001eb017700 Zea mays HOM05D007555 ORTHO05D009521 3.9e-21 105.5 86 50.0
CDE05G2937 Ceratophyllum demersum HOM05D007555 ORTHO05D009521 1.1e-20 104.0 82 51.2
Cfa017464 Carpinus fangiana HOM05D007555 ORTHO05D009521 1.5e-20 103.6 88 51.1
Lsat_1_v5_gn_2_111420 Lactuca sativa HOM05D007555 ORTHO05D009521 1.9e-20 103.2 58 74.1
Os03g0363400 Oryza sativa ssp. japonica HOM05D007555 ORTHO05D009521 4.8e-19 98.6 88 47.7
Pp3c1_22520 Physcomitrium patens HOM05D007555 ORTHO05D009521 2.4e-18 96.3 80 53.8
Sp6g39860 Schrenkiella parvula HOM05D007555 ORTHO05D009521 4.0e-18 95.5 58 63.8
Medtr0016s0020 Medicago truncatula HOM05D007555 ORTHO05D009521 6.9e-18 94.7 58 63.8
Sc08g0004110 Simmondsia chinensis HOM05D007555 ORTHO05D009521 1.5e-17 93.6 57 66.7
BcaC09g50387 Brassica carinata HOM05D007555 ORTHO05D009521 9.9e-17 90.9 90 46.7
BolC1t02552H Brassica oleracea HOM05D007555 ORTHO05D009521 2.4e-15 86.3 75 50.7
C02p41790 Brassica napus HOM05D007555 ORTHO05D009521 1.6e-14 83.6 67 50.7
C01p26070 Brassica napus HOM05D007555 ORTHO05D009521 2.7e-14 82.8 75 49.3
PGSC0003DMG400023920 Solanum tuberosum HOM05D007555 ORTHO05D009521 1.3e-13 80.5 85 50.6
BcaC03g16355 Brassica carinata HOM05D007555 ORTHO05D009521 3.0e-13 79.3 67 49.3
SEGI_05937 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 3.0e-13 79.3 63 58.7


User provided reference genes

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