Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2165 Fragaria x ananassa HOM05D002144 ORTHO05D002170 9.0e-116 420.2 208 100.0
FAN09G2251 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.2e-22 110.9 92 67.4
RcHm_v2.0_Chr3g0456211 Rosa chinensis HOM05D002144 ORTHO05D002170 7.6e-22 108.2 90 68.9
FvH4_6g06830 Fragaria vesca HOM05D002144 ORTHO05D002170 2.2e-21 106.7 89 68.5
FAN14G0731 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.2e-21 106.7 89 68.5
Prupe.6G319600 Prunus persica HOM05D002144 ORTHO05D002170 2.5e-17 93.2 89 59.6
Dinv40350 Davidia involucrata HOM05D002144 ORTHO05D002170 2.4e-15 86.7 137 43.8
TAR365G0709 Trochodendron aralioides HOM05D002144 ORTHO05D002170 4.0e-15 85.9 89 55.1
COL.COLO4_10536 Corchorus olitorius HOM05D002144 ORTHO05D002170 9.0e-15 84.7 89 55.1
A03p30880 Brassica napus HOM05D002144 ORTHO05D002170 1.2e-14 84.3 93 52.7
BraA03t12265Z Brassica rapa HOM05D002144 ORTHO05D002170 1.2e-14 84.3 93 52.7
Carub.0002s0799 Capsella rubella HOM05D002144 ORTHO05D002170 1.2e-14 84.3 89 56.2
Thhalv10029065m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 1.5e-14 84.0 89 56.2
CARHR289760 Cardamine hirsuta HOM05D002144 ORTHO05D002170 2.6e-14 83.2 89 53.9
QL03p019949 Quercus lobata HOM05D002144 ORTHO05D002170 3.4e-14 82.8 89 53.9
THA.LOC104820752 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 4.5e-14 82.4 89 55.1
Gohir.A11G268700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 5.8e-14 82.0 89 56.2
Gohir.D11G278700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 5.8e-14 82.0 89 56.2
Gorai.007G300900 Gossypium raimondii HOM05D002144 ORTHO05D002170 7.6e-14 81.6 89 56.2
BcaB01g02012 Brassica carinata HOM05D002144 ORTHO05D002170 9.9e-14 81.3 89 53.9
Duzib106G0149 Durio zibethinus HOM05D002144 ORTHO05D002170 9.9e-14 81.3 90 55.6
Lj5g0009461 Lotus japonicus HOM05D002144 ORTHO05D002170 9.9e-14 81.3 101 49.5
Thecc.05G314100 Theobroma cacao HOM05D002144 ORTHO05D002170 9.9e-14 81.3 89 55.1
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.3e-13 80.9 89 53.9
Glyma.03G234800 Glycine max HOM05D002144 ORTHO05D002170 1.3e-13 80.9 89 53.9
BcaC01g06737 Brassica carinata HOM05D002144 ORTHO05D002170 1.7e-13 80.5 92 54.3
Cfa006639 Carpinus fangiana HOM05D002144 ORTHO05D002170 1.7e-13 80.5 90 53.3
GSVIVG01031183001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.7e-13 80.5 89 50.6
C03p37650 Brassica napus HOM05D002144 ORTHO05D002170 2.2e-13 80.1 102 49.0
BolC3t16055H Brassica oleracea HOM05D002144 ORTHO05D002170 2.2e-13 80.1 106 49.1
Duzib177G0824 Durio zibethinus HOM05D002144 ORTHO05D002170 2.2e-13 80.1 89 53.9
Haze_04128 Corylus avellana HOM05D002144 ORTHO05D002170 2.9e-13 79.7 90 53.3
Potri.013G014900 Populus trichocarpa HOM05D002144 ORTHO05D002170 2.9e-13 79.7 93 57.0
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 3.8e-13 79.3 90 52.2
Sp6g02660 Schrenkiella parvula HOM05D002144 ORTHO05D002170 3.8e-13 79.3 89 53.9
TWI56G1061 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 3.8e-13 79.3 89 52.8
Phvul.007G197700 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 4.9e-13 79.0 90 55.6
CsaV3_2G006690 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.1e-12 77.8 90 51.1
Glyma.19G232400 Glycine max HOM05D002144 ORTHO05D002170 1.1e-12 77.8 89 52.8
C09p02240 Brassica napus HOM05D002144 ORTHO05D002170 1.4e-12 77.4 89 51.7
MELO3C004219.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.4e-12 77.4 90 52.2
Manes.09G171400 Manihot esculenta HOM05D002144 ORTHO05D002170 1.4e-12 77.4 89 51.7
AL1G65760 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 1.9e-12 77.0 106 45.3
CiPaw.07G022600 Carya illinoinensis HOM05D002144 ORTHO05D002170 1.9e-12 77.0 87 50.6
TPR.G33200 Trifolium pratense HOM05D002144 ORTHO05D002170 1.9e-12 77.0 89 51.7
Nn3g21509 Nelumbo nucifera HOM05D002144 ORTHO05D002170 2.4e-12 76.6 111 45.0
Ca_09348_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 4.2e-12 75.9 89 51.7
Lalb_Chr21g0310551 Lupinus albus HOM05D002144 ORTHO05D002170 5.4e-12 75.5 90 48.9
AT1G56220 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 7.1e-12 75.1 90 52.2
Medtr7g112860 Medicago truncatula HOM05D002144 ORTHO05D002170 7.1e-12 75.1 90 55.6
Sabra05G0029700 Salix brachista HOM05D002144 ORTHO05D002170 7.1e-12 75.1 90 51.1
Sabra13G0016800 Salix brachista HOM05D002144 ORTHO05D002170 7.1e-12 75.1 100 51.0
CARHR002160 Cardamine hirsuta HOM05D002144 ORTHO05D002170 9.3e-12 74.7 89 52.8
Duzib128G0499 Durio zibethinus HOM05D002144 ORTHO05D002170 9.3e-12 74.7 89 51.7
MBI18_g06040_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 9.3e-12 74.7 89 50.6
Medtr1g083440 Medicago truncatula HOM05D002144 ORTHO05D002170 9.3e-12 74.7 89 50.6
Psat6g150920 Pisum sativum HOM05D002144 ORTHO05D002170 9.3e-12 74.7 89 52.8
Potri.005G024250 Populus trichocarpa HOM05D002144 ORTHO05D002170 9.3e-12 74.7 89 49.4
VMungo0720G1086 Vigna mungo HOM05D002144 ORTHO05D002170 1.2e-11 74.3 90 52.2
Glyma.10G151000 Glycine max HOM05D002144 ORTHO05D002170 1.6e-11 73.9 89 49.4
Psat3g011320 Pisum sativum HOM05D002144 ORTHO05D002170 1.6e-11 73.9 92 48.9
Sabra13G0012800 Salix brachista HOM05D002144 ORTHO05D002170 1.6e-11 73.9 93 50.5
Aa31LG2G11660 Aethionema arabicum HOM05D002144 ORTHO05D002170 2.1e-11 73.6 90 51.1
arahy.Tifrunner.gnm1.ann1.1G1J9V Arachis hypogaea HOM05D002144 ORTHO05D002170 2.1e-11 73.6 89 51.7
arahy.Tifrunner.gnm1.ann1.DGZF1S Arachis hypogaea HOM05D002144 ORTHO05D002170 2.1e-11 73.6 117 44.4
arahy.Tifrunner.gnm1.ann1.FS7ZHJ Arachis hypogaea HOM05D002144 ORTHO05D002170 2.1e-11 73.6 89 51.7
arahy.Tifrunner.gnm1.ann1.TTE3SB Arachis hypogaea HOM05D002144 ORTHO05D002170 2.1e-11 73.6 117 44.4
BcaC01g01556 Brassica carinata HOM05D002144 ORTHO05D002170 2.1e-11 73.6 89 49.4
BolC3t21612H Brassica oleracea HOM05D002144 ORTHO05D002170 2.1e-11 73.6 89 49.4
Lalb_Chr18g0045821 Lupinus albus HOM05D002144 ORTHO05D002170 2.1e-11 73.6 92 52.2
C03p93120 Brassica napus HOM05D002144 ORTHO05D002170 2.7e-11 73.2 89 48.3
CANSAT56G3315 Cannabis sativa HOM05D002144 ORTHO05D002170 2.7e-11 73.2 90 52.2
Gohir.A13G174700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.7e-11 73.2 90 53.3
Sed0012165 Sechium edule HOM05D002144 ORTHO05D002170 6.0e-11 72.0 90 48.9
Glyma.20G237200 Glycine max HOM05D002144 ORTHO05D002170 7.9e-11 71.6 89 50.6
Gohir.D13G180500 Gossypium hirsutum HOM05D002144 ORTHO05D002170 7.9e-11 71.6 90 52.2
Gorai.013G205900 Gossypium raimondii HOM05D002144 ORTHO05D002170 7.9e-11 71.6 90 52.2
TPR.G17717 Trifolium pratense HOM05D002144 ORTHO05D002170 7.9e-11 71.6 90 48.9
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.0e-10 71.2 91 49.5
Gohir.A11G294400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.8e-10 70.5 88 52.3
BolC9t53152H Brassica oleracea HOM05D002144 ORTHO05D002170 3.0e-10 69.7 108 43.5
Gorai.007G341000 Gossypium raimondii HOM05D002144 ORTHO05D002170 3.0e-10 69.7 90 51.1
MD12G1212000 Malus domestica HOM05D002144 ORTHO05D002170 3.0e-10 69.7 83 50.6
DCAR_029386 Daucus carota HOM05D002144 ORTHO05D002170 5.1e-10 68.9 90 47.8
PGR083G0389 Punica granatum HOM05D002144 ORTHO05D002170 5.1e-10 68.9 92 53.3
Ah.04g161190 Amaranthus hybridus HOM05D002144 ORTHO05D002170 6.7e-10 68.6 93 46.2
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 6.7e-10 68.6 88 47.7
Gohir.D11G309100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 8.7e-10 68.2 90 51.1
Lj1g0021138 Lotus japonicus HOM05D002144 ORTHO05D002170 8.7e-10 68.2 92 50.0
THA.LOC104805892 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 1.1e-09 67.8 90 48.9
CiPaw.08G161100 Carya illinoinensis HOM05D002144 ORTHO05D002170 1.5e-09 67.4 89 47.2
EL10Ac4g09903 Beta vulgaris HOM05D002144 ORTHO05D002170 1.9e-09 67.0 94 44.7
Manes.08G116600 Manihot esculenta HOM05D002144 ORTHO05D002170 1.9e-09 67.0 90 47.8
Atru.chr2.81 Acer truncatum HOM05D002144 ORTHO05D002170 2.5e-09 66.6 89 46.1
A09p02140 Brassica napus HOM05D002144 ORTHO05D002170 4.3e-09 65.9 89 47.2
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 5.6e-09 65.5 89 48.3
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 5.6e-09 65.5 91 49.5
Nn4g25785 Nelumbo nucifera HOM05D002144 ORTHO05D002170 7.4e-09 65.1 90 45.6
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 1.3e-08 64.3 87 49.4
BcaC04g24010 Brassica carinata HOM05D002144 ORTHO05D002170 1.3e-08 64.3 88 47.7
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 1.3e-08 64.3 87 49.4
BolC2t09920H Brassica oleracea HOM05D002144 ORTHO05D002170 1.3e-08 64.3 87 49.4
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 1.3e-08 64.3 90 48.9
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 1.6e-08 63.9 89 47.2
A02p24940 Brassica napus HOM05D002144 ORTHO05D002170 2.1e-08 63.5 87 49.4
BraA02t07484Z Brassica rapa HOM05D002144 ORTHO05D002170 2.1e-08 63.5 87 49.4
AUR62000749 Chenopodium quinoa HOM05D002144 ORTHO05D002170 3.7e-08 62.8 96 46.9
AUR62000750 Chenopodium quinoa HOM05D002144 ORTHO05D002170 3.7e-08 62.8 96 46.9
MBI19_g39052_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 4.8e-08 62.4 95 44.2
VMungo0540G2203 Vigna mungo HOM05D002144 ORTHO05D002170 4.8e-08 62.4 55 67.3
BcaB05g23660 Brassica carinata HOM05D002144 ORTHO05D002170 6.2e-08 62.0 87 47.1
MD04G1198800 Malus domestica HOM05D002144 ORTHO05D002170 8.1e-08 61.6 80 47.5
Phvul.006G089000 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 1.1e-07 61.2 90 47.8
MSTRG.5114 Avicennia marina HOM05D002144 ORTHO05D002170 1.4e-07 60.8 90 43.3
Solyc01g099840.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 1.4e-07 60.8 89 43.8
Sopen00g009360 Solanum pennellii HOM05D002144 ORTHO05D002170 1.4e-07 60.8 89 43.8
Sopen01g043350 Solanum pennellii HOM05D002144 ORTHO05D002170 1.4e-07 60.8 89 43.8
BraA09t35863Z Brassica rapa HOM05D002144 ORTHO05D002170 1.8e-07 60.5 128 37.5
Migut.N02089 Erythranthe guttata HOM05D002144 ORTHO05D002170 3.1e-07 59.7 96 45.8
Peaxi162Scf00471g00710 Petunia axillaris HOM05D002144 ORTHO05D002170 3.1e-07 59.7 89 44.9
PGSC0003DMG400024720 Solanum tuberosum HOM05D002144 ORTHO05D002170 3.1e-07 59.7 90 44.4
vmacro19696 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 3.1e-07 59.7 89 46.1
Actinidia19775 Actinidia chinensis HOM05D002144 ORTHO05D002170 4.0e-07 59.3 89 47.2
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 5.3e-07 58.9 94 44.7
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 5.3e-07 58.9 43 72.1
CAN.G1459.22 Capsicum annuum HOM05D002144 ORTHO05D002170 6.9e-07 58.5 90 44.4
Hma1.2p1_1021F.1_g248660 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 2.0e-06 57.0 89 42.7
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 2.0e-06 57.0 97 45.4
MSTRG.27979 Avicennia marina HOM05D002144 ORTHO05D002170 2.6e-06 56.6 90 43.3
Nitab4.5_0005982g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 2.6e-06 56.6 91 47.3
PSO724G0168 Papaver somniferum HOM05D002144 ORTHO05D002170 2.6e-06 56.6 97 45.4
Actinidia21500 Actinidia chinensis HOM05D002144 ORTHO05D002170 3.4e-06 56.2 89 47.2
Rhsim05G0137800 Rhododendron simsii HOM05D002144 ORTHO05D002170 3.4e-06 56.2 90 47.8
Rhsim07G0190700 Rhododendron simsii HOM05D002144 ORTHO05D002170 4.5e-06 55.8 89 43.8
Aqoxy5G00761 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 7.6e-06 55.1 89 39.3
DCAR_003365 Daucus carota HOM05D002144 ORTHO05D002170 7.6e-06 55.1 90 43.3
SGA_v2.0_scaffold81G26097 Striga asiatica HOM05D002144 ORTHO05D002170 9.9e-06 54.7 136 36.0


User provided reference genes

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