Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2152 Fragaria x ananassa HOM05D001692 ORTHO05D005276 2.0e-172 609.0 305 100.0
FAN14G4917 Fragaria x ananassa HOM05D001692 ORTHO05D005276 9.0e-165 583.6 325 92.0
FAN09G0561 Fragaria x ananassa HOM05D001692 ORTHO05D005276 6.5e-163 577.4 305 95.4
FAN05G1140 Fragaria x ananassa HOM05D001692 ORTHO05D005276 3.2e-154 548.5 308 90.9
FvH4_6g38610 Fragaria vesca HOM05D001692 ORTHO05D005276 7.7e-148 527.3 308 88.6
RcHm_v2.0_Chr2g0152061 Rosa chinensis HOM05D001692 ORTHO05D005276 8.8e-144 513.8 306 86.3
MD17G1135300 Malus domestica HOM05D001692 ORTHO05D005276 6.5e-123 444.5 320 73.4
MD09G1149000 Malus domestica HOM05D001692 ORTHO05D005276 2.5e-122 442.6 324 73.5
Prupe.3G177200 Prunus persica HOM05D001692 ORTHO05D005276 1.6e-121 439.9 317 73.5
CANSAT64G1255 Cannabis sativa HOM05D001692 ORTHO05D005276 1.4e-117 426.8 279 78.5
QL08p044937 Quercus lobata HOM05D001692 ORTHO05D005276 1.6e-116 423.3 309 72.8
Haze_13535 Corylus avellana HOM05D001692 ORTHO05D005276 1.1e-114 417.2 347 65.1
Sabra16G0250400 Salix brachista HOM05D001692 ORTHO05D005276 1.1e-114 417.2 280 75.4
TAR627G0628 Trochodendron aralioides HOM05D001692 ORTHO05D005276 1.9e-114 416.4 277 75.1
MSTRG.6728 Avicennia marina HOM05D001692 ORTHO05D005276 4.3e-114 415.2 294 72.4
CiPaw.03G191700 Carya illinoinensis HOM05D001692 ORTHO05D005276 1.2e-113 413.7 280 75.7
Manes.02G089400 Manihot esculenta HOM05D001692 ORTHO05D005276 1.6e-113 413.3 310 71.0
CSS0026037 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 2.1e-113 412.9 276 74.6
CSS0018182 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 1.0e-112 410.6 274 75.2
Oeu001313.1 Olea europaea HOM05D001692 ORTHO05D005276 1.4e-112 410.2 272 76.5
TWI59G0785 Tripterygium wilfordii HOM05D001692 ORTHO05D005276 1.4e-112 410.2 282 75.2
Dinv13329 Davidia involucrata HOM05D001692 ORTHO05D005276 5.2e-112 408.3 269 75.5
Potri.005G204800 Populus trichocarpa HOM05D001692 ORTHO05D005276 5.2e-112 408.3 317 69.1
GSVIVG01020841001 Vitis vinifera HOM05D001692 ORTHO05D005276 6.8e-112 407.9 271 76.4
HanXRQChr10g0305671 Helianthus annuus HOM05D001692 ORTHO05D005276 8.9e-112 407.5 307 69.4
Potri.001G380100 Populus trichocarpa HOM05D001692 ORTHO05D005276 2.0e-111 406.4 268 76.1
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 1.3e-110 403.7 268 76.9
Gohir.A01G044100 Gossypium hirsutum HOM05D001692 ORTHO05D005276 2.2e-110 402.9 270 75.9
EL10Ac4g08464 Beta vulgaris HOM05D001692 ORTHO05D005276 2.9e-110 402.5 278 71.9
CSS0030572 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.7e-110 402.1 268 75.4
Sc03g0010860 Simmondsia chinensis HOM05D001692 ORTHO05D005276 6.4e-110 401.4 262 77.9
CSS0017658 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 8.3e-110 401.0 268 75.4
Lsat_1_v5_gn_5_126060 Lactuca sativa HOM05D001692 ORTHO05D005276 8.3e-110 401.0 294 70.4
Gohir.D01G034901 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.8e-109 399.8 270 75.6
Dinv26682 Davidia involucrata HOM05D001692 ORTHO05D005276 3.2e-109 399.1 269 74.0
GSVIVG01000481001 Vitis vinifera HOM05D001692 ORTHO05D005276 3.2e-109 399.1 255 77.3
Cc05_g10460 Coffea canephora HOM05D001692 ORTHO05D005276 5.4e-109 398.3 274 72.6
SalBow1G5551 Salvia bowleyana HOM05D001692 ORTHO05D005276 5.4e-109 398.3 268 74.3
Gorai.002G043100 Gossypium raimondii HOM05D001692 ORTHO05D005276 7.0e-109 397.9 292 71.6
PSO675G6085 Papaver somniferum HOM05D001692 ORTHO05D005276 1.2e-108 397.1 305 68.2
PGR042G3356 Punica granatum HOM05D001692 ORTHO05D005276 1.2e-108 397.1 266 75.9
Solyc07g061960.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 1.2e-108 397.1 283 71.7
Cpa.g.sc77.83 Carica papaya HOM05D001692 ORTHO05D005276 1.6e-108 396.7 266 74.8
Aqoxy1G01726 Aquilegia oxysepala HOM05D001692 ORTHO05D005276 2.0e-108 396.4 275 72.4
PSO541G6360 Papaver somniferum HOM05D001692 ORTHO05D005276 3.5e-108 395.6 300 69.3
Eucgr.A02020 Eucalyptus grandis HOM05D001692 ORTHO05D005276 4.6e-108 395.2 278 71.6
Nn3g20715 Nelumbo nucifera HOM05D001692 ORTHO05D005276 5.9e-108 394.8 261 74.7
Ciclev10021343m.g Citrus clementina HOM05D001692 ORTHO05D005276 1.0e-107 394.0 279 71.0
Sopen07g030230 Solanum pennellii HOM05D001692 ORTHO05D005276 1.0e-107 394.0 269 73.2
THA.LOC104822594 Tarenaya hassleriana HOM05D001692 ORTHO05D005276 1.3e-107 393.7 278 73.0
CANSAT56G0439 Cannabis sativa HOM05D001692 ORTHO05D005276 1.7e-107 393.3 264 76.1
COL.COLO4_08889 Corchorus olitorius HOM05D001692 ORTHO05D005276 1.7e-107 393.3 280 72.9
CsaV3_4G032640 Cucumis sativus L. HOM05D001692 ORTHO05D005276 1.7e-107 393.3 283 72.1
Migut.M00626 Erythranthe guttata HOM05D001692 ORTHO05D005276 1.7e-107 393.3 271 73.1
Eucgr.L01848 Eucalyptus grandis HOM05D001692 ORTHO05D005276 2.3e-107 392.9 262 76.3
LjContig00272g0024686 Lotus japonicus HOM05D001692 ORTHO05D005276 2.3e-107 392.9 300 68.3
Sed0008182 Sechium edule HOM05D001692 ORTHO05D005276 2.3e-107 392.9 281 72.2
MSTRG.15020 Avicennia marina HOM05D001692 ORTHO05D005276 3.0e-107 392.5 264 73.5
Duzib187G0194 Durio zibethinus HOM05D001692 ORTHO05D005276 3.9e-107 392.1 284 72.2
MBI07_g26365_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 5.0e-107 391.7 275 70.5
AT1G53580 Arabidopsis thaliana HOM05D001692 ORTHO05D005276 6.6e-107 391.3 265 75.1
ECA234G1166 Erigeron canadensis HOM05D001692 ORTHO05D005276 8.6e-107 391.0 262 74.0
Eucgr.F01401 Eucalyptus grandis HOM05D001692 ORTHO05D005276 8.6e-107 391.0 262 75.6
Medtr2g072190 Medicago truncatula HOM05D001692 ORTHO05D005276 8.6e-107 391.0 264 74.2
SalBow8G1908 Salvia bowleyana HOM05D001692 ORTHO05D005276 8.6e-107 391.0 268 73.9
Lj8A144G64 Lonicera japonica HOM05D001692 ORTHO05D005276 1.1e-106 390.6 279 70.6
C03p91630 Brassica napus HOM05D001692 ORTHO05D005276 2.5e-106 389.4 292 69.2
AUR62037988 Chenopodium quinoa HOM05D001692 ORTHO05D005276 2.5e-106 389.4 262 74.0
A08p01500 Brassica napus HOM05D001692 ORTHO05D005276 3.3e-106 389.0 271 72.3
ClCG11G017000 Citrullus lanatus HOM05D001692 ORTHO05D005276 4.3e-106 388.7 301 68.8
BolC3t21480H Brassica oleracea HOM05D001692 ORTHO05D005276 5.6e-106 388.3 292 69.2
Nitab4.5_0009792g0010 Nicotiana tabacum HOM05D001692 ORTHO05D005276 5.6e-106 388.3 289 68.9
BraA08t32202Z Brassica rapa HOM05D001692 ORTHO05D005276 7.3e-106 387.9 271 72.3
Sp1g40080 Schrenkiella parvula HOM05D001692 ORTHO05D005276 7.3e-106 387.9 289 70.2
Thhalv10011701m.g Eutrema salsugineum HOM05D001692 ORTHO05D005276 1.2e-105 387.1 274 72.6
Peaxi162Scf00111g00115 Petunia axillaris HOM05D001692 ORTHO05D005276 1.2e-105 387.1 265 72.5
BcaC08g43540 Brassica carinata HOM05D001692 ORTHO05D005276 1.6e-105 386.7 261 74.7
Lj3g0022741 Lotus japonicus HOM05D001692 ORTHO05D005276 1.6e-105 386.7 293 69.3
PGSC0003DMG400008562 Solanum tuberosum HOM05D001692 ORTHO05D005276 1.6e-105 386.7 254 74.4
BcaC01g01401 Brassica carinata HOM05D001692 ORTHO05D005276 2.1e-105 386.3 262 74.4
Lalb_Chr01g0016151 Lupinus albus HOM05D001692 ORTHO05D005276 2.1e-105 386.3 298 68.8
Sed0012666 Sechium edule HOM05D001692 ORTHO05D005276 2.1e-105 386.3 285 69.8
AL1G62170 Arabidopsis lyrata HOM05D001692 ORTHO05D005276 2.8e-105 386.0 268 73.9
Carub.0001s4279 Capsella rubella HOM05D001692 ORTHO05D005276 2.8e-105 386.0 271 72.7
Solyc12g011430.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 2.8e-105 386.0 279 70.3
CAN.G375.74 Capsicum annuum HOM05D001692 ORTHO05D005276 3.6e-105 385.6 265 73.2
Ca_03405_v3 Cicer arietinum L. HOM05D001692 ORTHO05D005276 3.6e-105 385.6 260 74.6
ATR0585G035 Amborella trichopoda HOM05D001692 ORTHO05D005276 4.7e-105 385.2 285 68.8
BcaB04g17072 Brassica carinata HOM05D001692 ORTHO05D005276 6.2e-105 384.8 271 72.3
BcaB07g33320 Brassica carinata HOM05D001692 ORTHO05D005276 8.0e-105 384.4 257 75.1
DCAR_019628 Daucus carota HOM05D001692 ORTHO05D005276 8.0e-105 384.4 273 72.5
Peaxi162Scf00000g05119 Petunia axillaris HOM05D001692 ORTHO05D005276 8.0e-105 384.4 254 74.8
Aa31LG10G1670 Aethionema arabicum HOM05D001692 ORTHO05D005276 1.4e-104 383.6 287 70.7
AUR62019708 Chenopodium quinoa HOM05D001692 ORTHO05D005276 3.1e-104 382.5 262 72.9
Nn4g26535 Nelumbo nucifera HOM05D001692 ORTHO05D005276 4.0e-104 382.1 269 70.6
SEGI_02719 Sequoiadendron giganteum HOM05D001692 ORTHO05D005276 1.5e-103 380.2 302 66.2
CARHR043840 Cardamine hirsuta HOM05D001692 ORTHO05D005276 2.0e-103 379.8 262 74.0
VMungo1080G0123 Vigna mungo HOM05D001692 ORTHO05D005276 2.6e-103 379.4 269 70.6
Sopen12g006780 Solanum pennellii HOM05D001692 ORTHO05D005276 3.4e-103 379.0 254 73.2
MBI10_g02223_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 9.8e-103 377.5 302 64.9
Phvul.005G062700 Phaseolus vulgaris HOM05D001692 ORTHO05D005276 1.3e-102 377.1 259 73.0
Os01g0667200 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D005276 1.7e-102 376.7 281 68.3
arahy.Tifrunner.gnm1.ann1.E3Z39S Arachis hypogaea HOM05D001692 ORTHO05D005276 2.2e-102 376.3 256 73.4
A06p00940 Brassica napus HOM05D001692 ORTHO05D005276 2.2e-102 376.3 255 73.7
Nitab4.5_0006409g0020 Nicotiana tabacum HOM05D001692 ORTHO05D005276 2.2e-102 376.3 265 70.2
SGA_v2.0_scaffold70G23592 Striga asiatica HOM05D001692 ORTHO05D005276 2.2e-102 376.3 297 66.7
C06p09290 Brassica napus HOM05D001692 ORTHO05D005276 2.9e-102 375.9 298 66.4
Glyma.13G261400 Glycine max HOM05D001692 ORTHO05D005276 2.9e-102 375.9 260 72.3
HPP92_009985 Vanilla planifolia HOM05D001692 ORTHO05D005276 7.8e-100 367.9 279 66.7
unitig_899.g15303 Utricularia gibba HOM05D001692 ORTHO05D005276 1.7e-99 366.7 272 69.9
arahy.Tifrunner.gnm1.ann1.YW8AP0 Arachis hypogaea HOM05D001692 ORTHO05D005276 3.0e-99 365.9 305 63.0
BolC6t36007H Brassica oleracea HOM05D001692 ORTHO05D005276 3.3e-98 362.5 252 72.6
CDE09G1013 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 3.3e-98 362.5 262 68.3
Mapoly0002s0284 Marchantia polymorpha HOM05D001692 ORTHO05D005276 5.6e-98 361.7 261 68.6
SMO364G0689 Selaginella moellendorffii HOM05D001692 ORTHO05D005276 4.0e-96 355.5 261 67.0
PGSC0003DMG400007053 Solanum tuberosum HOM05D001692 ORTHO05D005276 4.4e-95 352.1 246 72.4
Zm00001eb157380 Zea mays HOM05D001692 ORTHO05D005276 1.9e-93 346.7 319 57.7
MELO3C025595.2 Cucumis melo HOM05D001692 ORTHO05D005276 3.2e-93 345.9 283 65.7
Pp3c15_10210 Physcomitrium patens HOM05D001692 ORTHO05D005276 9.2e-93 344.4 253 66.8
Pp3c9_13000 Physcomitrium patens HOM05D001692 ORTHO05D005276 1.6e-92 343.6 253 66.4
CAN.G1320.2 Capsicum annuum HOM05D001692 ORTHO05D005276 6.0e-92 341.7 272 65.8
Psat1g009000 Pisum sativum HOM05D001692 ORTHO05D005276 2.3e-91 339.7 269 66.5
Duzib213G0109 Durio zibethinus HOM05D001692 ORTHO05D005276 1.9e-90 336.7 235 73.2
Thecc.01G169600 Theobroma cacao HOM05D001692 ORTHO05D005276 1.9e-90 336.7 251 70.5
CARHR043830 Cardamine hirsuta HOM05D001692 ORTHO05D005276 4.3e-90 335.5 259 65.3
Nitab4.5_0005492g0050 Nicotiana tabacum HOM05D001692 ORTHO05D005276 1.4e-88 330.5 233 70.8
CARHR042800 Cardamine hirsuta HOM05D001692 ORTHO05D005276 2.5e-82 309.7 259 62.5
Thecc.07G141800 Theobroma cacao HOM05D001692 ORTHO05D005276 8.9e-80 301.2 270 61.1
Nitab4.5_0000639g0070 Nicotiana tabacum HOM05D001692 ORTHO05D005276 9.3e-77 291.2 325 53.2
CBR_g52354 Chara braunii HOM05D001692 ORTHO05D005276 2.7e-76 289.7 294 54.4
RhsimUnG0205800 Rhododendron simsii HOM05D001692 ORTHO05D005276 5.1e-75 285.4 195 73.8
PGR083G0106 Punica granatum HOM05D001692 ORTHO05D005276 1.9e-74 283.5 260 60.4
TPR.G29676 Trifolium pratense HOM05D001692 ORTHO05D005276 1.9e-74 283.5 240 62.5
Actinidia03648 Actinidia chinensis HOM05D001692 ORTHO05D005276 3.6e-73 279.3 250 59.6
Sabra05G0155600 Salix brachista HOM05D001692 ORTHO05D005276 2.6e-71 273.1 171 78.9
BraA06t23321Z Brassica rapa HOM05D001692 ORTHO05D005276 5.1e-67 258.8 174 73.6
MCO11G587 Micromonas commoda HOM05D001692 ORTHO05D005276 2.5e-66 256.5 274 53.3
vmacro09424 Vaccinium macrocarpon HOM05D001692 ORTHO05D005276 3.3e-66 256.1 283 52.7
MBI10_g05866_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 1.6e-65 253.8 212 62.7
PRCOL_00005441 Prasinoderma coloniale HOM05D001692 ORTHO05D005276 1.1e-64 251.1 274 51.5
Haze_27488 Corylus avellana HOM05D001692 ORTHO05D005276 5.1e-59 232.3 259 51.7
Hund10367 Selenicereus undatus HOM05D001692 ORTHO05D005276 3.4e-55 219.5 244 51.6
Gorai.006G053200 Gossypium raimondii HOM05D001692 ORTHO05D005276 3.2e-53 213.0 136 72.8
TPR.G19262 Trifolium pratense HOM05D001692 ORTHO05D005276 3.2e-53 213.0 131 75.6
Gorai.005G073200 Gossypium raimondii HOM05D001692 ORTHO05D005276 7.4e-50 201.8 128 73.4
Gohir.D03G015800 Gossypium hirsutum HOM05D001692 ORTHO05D005276 3.7e-49 199.5 128 74.2
Gohir.D06G025300 Gossypium hirsutum HOM05D001692 ORTHO05D005276 3.7e-49 199.5 128 74.2
Gohir.D11G187900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 3.7e-49 199.5 128 74.2
Lalb_Chr25g0285521 Lupinus albus HOM05D001692 ORTHO05D005276 2.4e-48 196.8 156 64.7
Gohir.D04G055900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.3e-46 191.0 128 71.1
CDE02G1772 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 5.5e-45 185.7 117 76.1
CBR_g8131 Chara braunii HOM05D001692 ORTHO05D005276 1.6e-44 184.1 205 51.2
SHI03278 Sapria himalayana HOM05D001692 ORTHO05D005276 5.7e-42 175.6 121 70.2
Gorai.013G082600 Gossypium raimondii HOM05D001692 ORTHO05D005276 2.1e-36 157.1 105 71.4
CDE02G3376 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 2.2e-33 147.1 106 67.9
Lsat_1_v5_gn_0_2340 Lactuca sativa HOM05D001692 ORTHO05D005276 5.0e-30 136.0 151 49.7
vmacro09423 Vaccinium macrocarpon HOM05D001692 ORTHO05D005276 5.0e-30 136.0 77 80.5
Sabra05G0155400 Salix brachista HOM05D001692 ORTHO05D005276 4.2e-29 132.9 83 74.7
RhsimUnG0205900 Rhododendron simsii HOM05D001692 ORTHO05D005276 2.1e-28 130.6 75 78.7
AagrBONN_evm.TU.Sc2ySwM_117.1112 Anthoceros agrestis HOM05D001692 ORTHO05D005276 2.2e-22 110.5 66 74.2
Medtr7g118110 Medicago truncatula HOM05D000168 ORTHO05D048861 5.9e-15 85.9 51 78.4
Psat2g062440 Pisum sativum HOM05D002042 ORTHO05D008431 6.5e-14 82.4 189 33.3
SHI03282 Sapria himalayana HOM05D001692 ORTHO05D005276 8.5e-14 82.0 49 77.6
Medtr5g021570 Medicago truncatula HOM05D001692 ORTHO05D048896 1.5e-13 81.3 47 76.6
Medtr5g097770 Medicago truncatula HOM05D001692 ORTHO05D048896 1.5e-13 81.3 47 76.6
ECA238G3556 Erigeron canadensis HOM05D002443 ORTHO05D002674 1.8e-11 74.3 188 30.9
PGSC0003DMG400027594 Solanum tuberosum HOM05D002042 ORTHO05D008431 3.0e-11 73.6 186 30.1
arahy.Tifrunner.gnm1.ann1.10EZJ8 Arachis hypogaea HOM05D002042 ORTHO05D008431 4.0e-11 73.2 188 31.9
vmacro09949 Vaccinium macrocarpon HOM05D002042 ORTHO05D008431 6.8e-11 72.4 205 28.3
SHI03281 Sapria himalayana HOM05D001692 ORTHO05D000001 1.2e-10 71.6 78 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1644 Anthoceros agrestis HOM05D002042 ORTHO05D003928 2.6e-10 70.5 230 27.0
arahy.Tifrunner.gnm1.ann1.2X8VUU Arachis hypogaea HOM05D002042 ORTHO05D008431 2.6e-10 70.5 188 31.9
Pp3c3_9810 Physcomitrium patens HOM05D002042 ORTHO05D003928 2.2e-09 67.4 189 30.2
Lj3g0017638 Lotus japonicus HOM05D002042 ORTHO05D003928 1.8e-08 64.3 217 27.6
PRCOL_00006080 Prasinoderma coloniale HOM05D002042 ORTHO05D003928 1.2e-07 61.6 160 31.9
vmacro03132 Vaccinium macrocarpon HOM05D041814 ORTHO05D037819 7.7e-07 58.9 30 83.3


User provided reference genes

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