Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.7e-142 507.3 248 100.0
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.6e-122 442.2 251 88.8
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 5.7e-109 397.9 248 81.0
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.0e-102 377.1 258 78.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 7.0e-91 337.8 249 69.1
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 9.2e-91 337.4 249 69.9
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 2.3e-89 332.8 251 68.5
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.2e-76 289.7 289 59.9
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.9e-75 286.6 240 62.1
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 4.1e-75 285.4 149 95.3
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 5.4e-75 285.0 250 59.6
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 5.4e-75 285.0 250 58.8
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.7e-73 280.0 236 61.4
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 2.3e-73 279.6 255 57.6
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 8.6e-73 277.7 231 60.2
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.8e-71 272.7 240 58.3
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 2.8e-71 272.7 238 60.5
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 4.7e-71 271.9 231 60.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.1e-70 270.8 250 55.6
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 3.1e-70 269.2 238 56.7
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 6.8e-70 268.1 248 53.6
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 8.9e-70 267.7 247 56.7
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 8.9e-70 267.7 238 56.3
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 4.4e-69 265.4 250 56.0
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 5.8e-69 265.0 242 57.9
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 2.2e-68 263.1 246 53.7
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 2.9e-68 262.7 241 56.4
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 8.3e-68 261.2 231 55.4
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.9e-67 260.0 236 56.8
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.9e-67 260.0 241 54.8
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.4e-67 259.6 239 56.9
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.2e-66 257.3 239 55.6
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.6e-66 256.9 225 54.7
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.7e-66 256.1 274 52.2
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 4.6e-66 255.4 251 54.6
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 6.0e-66 255.0 239 54.0
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.0e-65 254.2 239 55.6
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 1.3e-65 253.8 235 52.8
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.3e-65 253.8 240 53.3
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.7e-65 253.4 250 51.6
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 2.3e-65 253.1 210 61.4
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 3.9e-65 252.3 253 52.2
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 5.1e-65 251.9 223 56.1
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.6e-65 251.5 247 53.8
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.6e-65 251.1 241 54.4
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.3e-64 249.2 237 52.3
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 4.3e-64 248.8 250 52.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 7.3e-64 248.1 224 53.6
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.2e-63 247.3 247 53.8
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 1.2e-63 247.3 251 52.2
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.1e-63 246.5 235 53.6
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.8e-63 246.1 225 52.9
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 4.7e-63 245.4 250 53.6
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 4.7e-63 245.4 247 52.2
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 4.0e-62 242.3 242 51.7
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 8.9e-62 241.1 262 49.2
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.5e-61 240.4 232 53.4
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 3.4e-61 239.2 249 52.2
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.7e-60 236.9 239 50.2
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 2.2e-60 236.5 251 48.6
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 2.9e-60 236.1 236 51.3
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 3.8e-60 235.7 247 51.8
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.4e-59 233.0 236 51.7
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 5.4e-59 231.9 232 51.3
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 7.1e-59 231.5 232 51.3
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 7.1e-59 231.5 183 62.3
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 9.2e-59 231.1 234 50.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 1.2e-58 230.7 231 50.2
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.6e-58 230.3 232 51.3
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.1e-58 229.9 232 49.6
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 3.0e-57 226.1 249 46.2
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.9e-57 225.7 245 44.9
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 6.6e-57 224.9 242 51.7
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 1.1e-56 224.2 227 49.8
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.1e-56 224.2 236 50.4
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.5e-56 223.8 241 47.7
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.9e-56 223.4 249 51.8
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 5.6e-56 221.9 240 45.4
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-55 220.7 237 47.3
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.2e-55 220.7 236 45.8
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.2e-55 220.7 234 47.4
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.8e-55 219.5 237 47.3
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 3.6e-55 219.2 232 48.7
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 8.1e-55 218.0 250 47.2
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.1e-54 217.6 244 47.5
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.4e-54 217.2 244 46.7
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 2.4e-54 216.5 250 46.8
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 9.0e-54 214.5 189 54.0
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 9.0e-54 214.5 234 48.7
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-53 214.2 228 46.5
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.2e-53 214.2 228 46.5
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.2e-53 214.2 228 51.8
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.5e-53 213.8 198 54.5
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 4.4e-53 212.2 244 47.1
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 9.9e-53 211.1 251 46.6
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 9.9e-53 211.1 245 48.2
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-52 210.7 229 47.2
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.3e-52 210.7 229 47.2
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.3e-52 210.7 185 60.5
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 2.2e-52 209.9 229 46.7
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.2e-52 209.9 219 47.0
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.9e-52 209.5 237 48.5
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 6.4e-52 208.4 238 47.1
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 8.4e-52 208.0 195 51.8
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 8.4e-52 208.0 227 44.5
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 1.4e-51 207.2 232 45.7
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 4.2e-51 205.7 218 47.7
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.1e-51 204.9 237 47.7
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 7.1e-51 204.9 219 46.1
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 7.1e-51 204.9 231 46.3
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 9.3e-51 204.5 245 46.1
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.2e-50 204.1 229 44.5
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 3.5e-50 202.6 239 44.8
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.7e-49 200.3 190 54.7
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 3.3e-48 196.1 224 47.3
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.8e-47 192.2 259 44.4
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.4e-46 189.9 258 41.5
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 4.0e-46 189.1 267 39.3
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 4.0e-46 189.1 182 54.9
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 2.7e-42 176.4 211 41.2
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.8e-37 158.7 232 42.2
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 9.9e-37 157.9 144 53.5
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.2e-36 156.8 225 42.2
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 3.8e-36 156.0 113 65.5
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 3.8e-36 156.0 258 37.2
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.2e-34 151.0 209 41.1
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 3.5e-34 149.4 114 59.6
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.5e-32 144.1 196 38.8
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 2.1e-31 140.2 219 33.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 8.2e-31 138.3 159 41.5
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.9e-24 117.1 107 53.3
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.1e-19 101.3 187 34.8
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.4e-16 88.6 96 46.9
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 9.7e-16 88.2 97 50.5
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 9.7e-16 88.2 132 43.2
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.8e-15 86.7 81 49.4
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 6.3e-15 85.5 97 51.5
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 8.2e-15 85.1 50 76.0
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.4e-14 83.6 103 38.8
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 3.4e-13 79.7 61 54.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 5.9e-13 79.0 109 38.5
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 5.0e-12 75.9 60 56.7
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.4e-11 74.3 106 39.6
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.1e-10 70.5 59 54.2
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.6e-10 69.7 78 42.3
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.9e-10 68.6 107 38.3
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.7e-09 65.5 82 45.1
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 3.7e-07 59.7 31 71.0
AagrBONN_evm.TU.Sc2ySwM_344.4109 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.4e-06 57.8 86 36.0
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.4e-06 57.8 58 44.8


User provided reference genes

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