Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.1e-156 556.6 295 100.0
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.5e-144 513.8 276 98.6
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 8.5e-144 513.8 276 98.6
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 5.5e-143 511.1 276 98.2
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 9.7e-140 500.4 287 94.4
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 1.1e-138 496.9 276 95.7
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.1e-130 468.8 276 88.0
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.2e-129 466.8 276 87.3
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.3e-128 463.4 275 87.3
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 4.7e-126 454.9 276 83.3
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.8e-125 453.0 273 84.6
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.8e-125 453.0 276 85.1
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.2e-124 450.3 276 84.8
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.2e-124 450.3 276 84.1
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.8e-123 445.7 275 82.2
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.2e-121 440.3 273 82.8
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 2.0e-121 439.5 277 83.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.0e-120 437.2 276 82.2
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 2.9e-120 435.6 274 83.6
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 8.6e-120 434.1 274 82.5
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.9e-119 433.0 277 80.9
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 3.3e-119 432.2 274 82.8
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 3.3e-119 432.2 274 82.8
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 4.2e-119 431.8 300 76.0
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 5.5e-119 431.4 274 81.8
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.2e-118 430.3 273 80.2
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 2.1e-118 429.5 273 80.6
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 2.8e-118 429.1 282 78.4
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 4.7e-118 428.3 277 80.1
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 4.7e-118 428.3 273 79.9
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 8.0e-118 427.6 273 79.5
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.4e-117 426.8 273 80.6
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.4e-117 426.8 277 80.9
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.8e-117 426.4 272 81.6
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.3e-117 426.0 272 80.1
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 2.3e-117 426.0 277 79.8
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 3.0e-117 425.6 274 79.6
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 5.2e-117 424.9 274 81.0
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 5.2e-117 424.9 274 79.9
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 5.2e-117 424.9 274 79.9
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 6.8e-117 424.5 274 79.6
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 6.8e-117 424.5 273 80.2
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.8e-117 424.5 277 79.4
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 8.9e-117 424.1 272 79.8
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 8.9e-117 424.1 270 80.0
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.2e-116 423.7 269 79.9
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 5.7e-116 421.4 273 81.0
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 5.7e-116 421.4 274 78.1
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 9.8e-116 420.6 273 79.5
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.7e-115 419.9 277 79.4
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 2.2e-115 419.5 273 78.8
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 2.8e-115 419.1 272 78.7
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 3.7e-115 418.7 274 80.3
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 4.9e-115 418.3 277 78.7
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 8.3e-115 417.5 272 78.3
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 8.3e-115 417.5 272 78.3
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 8.3e-115 417.5 274 78.8
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.8e-114 416.4 274 78.1
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.4e-114 416.0 274 77.4
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 4.1e-114 415.2 269 78.4
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 5.4e-114 414.8 274 77.4
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 5.4e-114 414.8 274 78.1
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 9.2e-114 414.1 273 77.3
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.6e-113 413.3 276 77.2
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.0e-113 412.9 276 76.8
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.0e-113 412.9 292 74.3
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 3.5e-113 412.1 280 77.1
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 5.9e-113 411.4 304 72.7
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 5.9e-113 411.4 274 77.4
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.3e-112 409.5 274 77.0
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 2.3e-112 409.5 272 77.6
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.6e-112 407.9 277 76.2
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.6e-111 404.8 274 77.7
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 9.5e-111 404.1 283 74.2
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.6e-110 403.3 274 78.1
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 6.1e-110 401.4 279 75.3
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.8e-109 399.8 277 74.7
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 2.3e-109 399.4 276 73.6
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 8.9e-109 397.5 277 74.7
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 8.9e-109 397.5 277 75.5
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-108 397.1 277 74.7
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 1.2e-108 397.1 277 74.7
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-108 396.7 277 74.4
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.0e-108 396.4 277 74.4
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 2.6e-108 396.0 276 72.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 4.4e-108 395.2 277 74.0
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 4.4e-108 395.2 276 72.8
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 7.5e-108 394.4 277 74.4
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 7.5e-108 394.4 276 75.7
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 9.8e-108 394.0 277 73.6
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.7e-107 393.3 277 73.6
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.7e-107 393.3 277 74.0
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-105 386.7 277 72.6
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 2.0e-105 386.3 274 70.8
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 6.0e-105 384.8 277 72.2
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 6.0e-105 384.8 277 72.2
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 6.0e-105 384.8 277 72.2
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 3.0e-104 382.5 319 65.8
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.9e-104 382.1 335 63.6
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.9e-104 382.1 369 59.3
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 1.5e-103 380.2 281 71.5
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 5.6e-103 378.3 265 74.3
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 9.5e-103 377.5 274 71.9
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 8.0e-102 374.4 290 67.9
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.0e-101 372.1 322 64.3
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.4e-100 368.6 268 71.6
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.3e-99 367.1 271 72.7
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.1e-98 364.0 273 69.6
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 4.1e-98 362.1 256 71.9
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.0e-96 355.9 271 67.5
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.9e-96 355.5 271 67.5
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 6.6e-96 354.8 269 67.3
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 3.6e-94 349.0 265 66.8
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 7.5e-92 341.3 270 61.9
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.6e-89 333.6 265 64.9
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 6.0e-89 331.6 274 60.9
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 6.0e-89 331.6 488 45.1
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.7e-88 330.1 488 44.9
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 6.6e-88 328.2 213 81.2
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.9e-83 312.0 299 65.2
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 5.4e-82 308.5 271 60.9
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.3e-80 303.1 265 60.4
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-79 300.8 255 63.1
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 4.7e-78 295.4 255 63.5
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.4e-77 293.1 263 57.4
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.4e-77 293.1 263 57.0
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 1.5e-76 290.4 263 57.4
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.4e-76 289.3 265 57.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 9.9e-76 287.7 258 62.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-75 287.0 282 56.7
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.7e-75 287.0 259 64.9
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-75 286.6 259 62.5
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-75 286.2 282 57.1
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-73 280.8 282 57.1
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 4.6e-73 278.9 282 56.4
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 7.3e-71 271.6 276 52.9
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-70 269.6 255 60.0
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.1e-69 267.7 164 82.3
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 5.4e-66 255.4 279 48.4
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 2.1e-65 253.4 140 93.6
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-65 253.1 256 56.6
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-64 251.1 226 61.5
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-64 250.0 281 53.7
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 2.2e-59 233.4 266 49.2
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.8e-59 232.6 273 51.3
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 2.0e-52 210.3 251 49.0
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-50 204.5 269 48.7
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.2e-50 203.0 164 73.8
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 4.6e-49 199.1 131 77.9
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.2e-46 190.3 136 75.0
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.2e-43 180.3 137 68.6
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.7e-41 173.3 138 63.0
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.8e-40 168.3 148 62.2
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 1.5e-39 167.5 415 33.3
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.2e-38 163.7 96 87.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 6.3e-38 162.2 219 46.1
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.4e-36 156.4 123 65.9
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.0e-35 152.5 101 78.2
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 5.5e-34 149.1 140 64.3
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 5.3e-29 132.5 117 59.0
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 2.2e-27 127.1 264 31.8
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.9e-27 126.7 276 31.2
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.9e-26 124.0 306 29.1
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 5.5e-26 122.5 73 91.8
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 6.1e-25 119.0 67 85.1
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.3e-22 111.3 150 48.0
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.5e-18 97.8 53 94.3
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.5e-18 97.1 82 61.0
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 8.0e-17 92.0 52 88.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-16 91.7 52 86.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-16 91.7 52 86.5
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 2.3e-16 90.5 52 86.5
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.3e-16 90.5 69 62.3
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 4.0e-16 89.7 71 66.2
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 5.2e-16 89.4 52 86.5
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.8e-16 88.6 59 76.3
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-15 87.8 58 72.4
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.5e-15 87.8 72 61.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.5e-15 87.8 72 61.1
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-15 86.3 50 84.0
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.7e-14 84.3 72 58.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.7e-14 83.2 72 59.7
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.9e-11 73.6 66 54.5
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 2.0e-07 60.8 52 59.6
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 3.4e-07 60.1 40 75.0


User provided reference genes

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