Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1844.3 947 100.0
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1681.0 989 90.6
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 0.0e+00 1628.6 956 90.8
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1615.1 987 87.9
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1614.7 987 88.0
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1541.9 1009 83.1
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 0.0e+00 1501.1 950 85.6
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 0.0e+00 1208.4 869 77.2
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 3.2e-285 985.3 1055 56.6
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 1.9e-253 879.8 1058 53.4
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 5.5e-253 878.2 1052 53.5
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 2.1e-175 620.5 1094 40.8
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 3.8e-169 599.7 1100 39.6
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 3.8e-153 546.6 1061 38.4
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 4.5e-138 496.5 1016 39.2
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 5.0e-137 493.0 1017 37.3
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 9.4e-136 488.8 1014 38.5
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.2e-135 488.4 994 39.9
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 3.7e-132 476.9 1063 36.2
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 4.8e-132 476.5 1024 36.3
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 4.8e-132 476.5 1020 36.3
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 4.1e-131 473.4 1084 36.3
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.2e-130 471.9 1031 36.4
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 7.7e-130 469.2 1020 36.2
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 1.0e-129 468.8 1039 36.1
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.3e-129 468.4 1030 36.0
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 2.2e-129 467.6 987 37.5
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 6.5e-129 466.1 1042 35.7
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.2e-127 461.8 1044 36.7
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 6.7e-126 456.1 1030 35.6
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 4.2e-120 436.8 1057 34.8
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 2.1e-119 434.5 1044 34.9
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 2.6e-117 427.6 1016 34.6
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 3.7e-116 423.7 568 45.2
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 2.4e-115 421.0 1109 33.5
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 6.6e-113 412.9 986 34.9
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 4.7e-111 406.8 975 34.8
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 2.0e-109 401.4 1045 33.6
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.2e-106 392.1 900 35.3
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.0e-105 389.0 1008 34.2
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 1.3e-105 388.7 956 33.7
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 3.1e-102 377.5 908 33.6
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 5.2e-102 376.7 1115 33.2
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 1.5e-101 375.2 1100 32.3
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 4.4e-101 373.6 1116 32.7
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 9.8e-101 372.5 969 33.1
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 8.3e-100 369.4 1119 32.7
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.2e-98 365.5 1010 32.6
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 1.6e-98 365.2 1015 32.7
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 2.7e-98 364.4 1015 32.4
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 3.5e-98 364.0 805 35.7
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 4.6e-98 363.6 1084 32.5
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.0e-97 362.5 1086 33.4
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.0e-97 360.9 1096 31.6
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 9.5e-96 355.9 1011 32.0
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 3.6e-95 354.0 1006 33.8
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 4.0e-94 350.5 1058 31.2
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 3.4e-93 347.4 935 32.9
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 9.8e-93 345.9 840 33.3
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 4.1e-91 340.5 898 33.5
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 1.2e-90 339.0 1051 30.9
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 1.7e-89 335.1 649 37.8
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 2.3e-89 334.7 903 32.3
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 5.1e-89 333.6 1020 30.9
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.9e-88 331.6 974 31.5
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 3.3e-88 330.9 983 32.7
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 8.1e-87 326.2 1025 31.2
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 1.1e-86 325.9 576 37.7
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 2.6e-85 321.2 1008 31.1
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 4.9e-84 317.0 990 30.4
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 1.6e-82 312.0 895 31.2
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.1e-80 305.8 988 31.3
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 1.9e-80 305.1 883 31.8
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 2.8e-79 301.2 1058 29.0
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 4.7e-79 300.4 948 31.1
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 3.4e-77 294.3 1033 30.5
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 2.2e-76 291.6 1022 30.0
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.9e-76 291.2 519 38.2
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 4.9e-76 290.4 462 39.2
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 1.9e-75 288.5 1008 28.7
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 4.2e-75 287.3 1042 29.4
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 5.4e-75 287.0 1049 29.2
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 7.1e-75 286.6 999 29.6
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 9.3e-75 286.2 585 34.4
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 1.6e-74 285.4 514 37.9
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 2.1e-74 285.0 996 29.2
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.7e-74 284.6 962 30.5
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.0e-73 282.7 875 32.7
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 3.9e-73 280.8 1003 29.3
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 1.1e-72 279.3 584 34.6
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 4.3e-72 277.3 383 41.8
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 1.1e-70 272.7 1000 28.9
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.8e-70 271.9 1006 28.4
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 3.4e-69 267.7 383 40.7
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 4.4e-69 267.3 979 28.5
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 2.2e-68 265.0 1005 28.4
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.1e-64 252.7 919 28.5
FvH4_3g29010 Fragaria vesca HOM05D006048 ORTHO05D035641 2.4e-62 245.0 160 86.2
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 7.1e-59 233.4 368 40.8
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 5.8e-53 213.8 363 36.6
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 8.4e-52 209.9 180 54.4
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 6.5e-44 183.7 319 34.5
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 7.1e-43 180.3 515 30.1
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 4.6e-42 177.6 176 47.7
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 3.0e-41 174.9 714 30.8
FvH4_3g17890 Fragaria vesca HOM05D006048 ORTHO05D035641 7.9e-34 150.2 224 49.6
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 8.8e-33 146.7 220 45.9
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.1e-32 146.4 228 38.6
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 9.7e-32 143.3 380 28.4
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.7e-31 142.5 381 28.3
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 2.2e-31 142.1 297 39.7
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 2.8e-31 141.7 297 39.4
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 8.5e-28 130.2 241 33.2
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 6.1e-26 124.0 258 35.7
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 5.1e-25 120.9 340 27.6
FAN11G2287 Fragaria x ananassa HOM05D006048 ORTHO05D035641 4.5e-21 107.8 83 74.7
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 8.5e-20 103.6 509 29.7
FAN18G2849 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.8e-15 88.6 62 82.3
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 6.3e-15 87.4 119 43.7
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 5.3e-14 84.3 93 47.3
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 3.5e-13 81.6 187 31.0
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.8e-07 61.2 92 42.4


User provided reference genes

Program Settings