Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 6.5e-285 983.4 508 100.0
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 4.7e-275 950.7 524 94.7
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.7e-272 941.0 531 92.8
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 4.5e-270 934.1 555 89.2
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 4.7e-267 924.1 534 91.4
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 7.8e-262 906.7 497 95.2
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 1.1e-250 869.8 498 90.6
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.9e-244 849.0 497 90.7
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 3.5e-198 695.3 503 75.5
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 6.9e-186 654.4 503 71.6
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 1.3e-171 607.1 485 68.9
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 1.4e-130 470.7 509 56.2
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 4.4e-124 449.1 511 55.0
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 1.6e-113 414.1 504 52.0
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 2.1e-113 413.7 499 53.7
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 2.5e-111 406.8 503 51.3
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 4.0e-109 399.4 537 48.2
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 3.8e-107 392.9 502 50.8
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 9.3e-106 388.3 499 49.3
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 7.8e-105 385.2 509 49.3
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 6.6e-104 382.1 504 49.0
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 6.9e-101 372.1 500 48.0
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 1.2e-100 371.3 500 47.8
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 2.6e-100 370.2 503 47.9
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 2.1e-94 350.5 514 45.9
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 4.9e-91 339.3 499 45.9
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 4.3e-79 299.7 399 49.1
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 5.7e-79 299.3 493 43.0
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 6.3e-78 295.8 398 49.2
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 2.6e-76 290.4 496 42.7
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 3.4e-76 290.0 580 40.3
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 1.3e-75 288.1 519 41.4
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 1.7e-75 287.7 507 42.2
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 1.4e-74 284.6 505 42.2
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 1.4e-74 284.6 500 42.0
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 5.5e-74 282.7 502 41.6
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 1.4e-72 278.1 569 39.0
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 3.9e-72 276.6 569 38.7
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 5.1e-72 276.2 504 40.1
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 2.5e-71 273.9 522 40.8
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 3.7e-70 270.0 569 38.0
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 8.2e-70 268.9 494 40.5
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 1.8e-69 267.7 548 39.2
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 4.5e-68 263.1 493 40.0
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 3.8e-67 260.0 492 39.6
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 1.4e-66 258.1 324 50.9
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 3.2e-66 256.9 514 39.7
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 1.2e-65 255.0 497 39.4
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 1.2e-65 255.0 507 39.6
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 1.6e-65 254.6 496 38.7
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 2.1e-65 254.2 504 37.9
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 4.7e-65 253.1 493 40.0
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 4.7e-65 253.1 500 40.0
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 1.0e-64 251.9 496 39.1
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 1.5e-63 248.1 491 39.7
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 5.7e-63 246.1 524 38.4
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 7.4e-63 245.7 374 44.9
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 2.8e-62 243.8 499 39.5
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 1.1e-61 241.9 515 39.2
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 1.0e-59 235.3 510 37.1
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 3.2e-58 230.3 506 36.4
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 3.2e-58 230.3 509 36.1
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 7.2e-58 229.2 508 38.6
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 9.4e-58 228.8 492 39.0
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 6.1e-57 226.1 520 37.1
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 6.5e-51 206.1 493 35.3
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 1.9e-50 204.5 519 35.3
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 4.7e-49 199.9 286 49.0
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 8.3e-46 189.1 434 36.4
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 2.4e-45 187.6 364 37.1
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 7.0e-45 186.0 448 34.6
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 1.7e-43 181.4 490 35.3
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 3.8e-43 180.3 390 36.7
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 3.2e-42 177.2 484 32.6
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 7.2e-42 176.0 320 37.8
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 8.0e-41 172.6 390 37.2
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 8.0e-41 172.6 390 37.2
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 2.3e-40 171.0 501 33.1
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 4.0e-40 170.2 403 37.0
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 3.4e-39 167.2 400 36.2
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 3.4e-39 167.2 398 37.2
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 4.4e-39 166.8 380 34.7
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.3e-38 165.2 401 35.7
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 6.3e-38 162.9 492 33.5
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 4.1e-37 160.2 339 40.1
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 7.7e-36 156.0 409 34.5
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 1.7e-35 154.8 375 37.3
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 5.0e-35 153.3 501 31.7
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 3.0e-32 144.1 205 48.3
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 1.1e-29 135.6 493 32.7
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 1.1e-29 135.6 402 34.3
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 5.4e-29 133.3 493 29.2
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 9.2e-29 132.5 338 32.2
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 7.8e-28 129.4 390 33.6
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.3e-27 128.6 180 50.0
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 5.0e-27 126.7 399 33.3
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 4.3e-26 123.6 146 50.7
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 1.8e-24 118.2 339 31.0
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 4.0e-24 117.1 146 49.3
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 8.3e-22 109.4 312 33.0
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 1.1e-21 109.0 178 45.5
Ca_08983_v3 Cicer arietinum L. HOM05D005512 ORTHO05D006716 9.2e-21 105.9 433 28.4
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 1.2e-20 105.5 247 36.8
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 6.0e-20 103.2 379 30.9
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 7.8e-20 102.8 285 31.9
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 7.8e-20 102.8 340 32.1
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 2.3e-19 101.3 225 36.9
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 9.5e-18 95.9 236 39.8
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 2.8e-17 94.4 175 39.4
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 4.7e-17 93.6 175 39.4
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 1.4e-16 92.0 225 35.6
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 1.2e-15 89.0 190 35.3
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 1.2e-15 89.0 270 32.6
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 4.4e-15 87.0 116 51.7
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 3.7e-14 84.0 358 28.2
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 4.1e-13 80.5 236 32.6
Actinidia02438 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.6e-12 78.6 123 45.5
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 6.0e-12 76.6 163 38.7
Atru.chr8.1591 Acer truncatum HOM05D005512 ORTHO05D006716 1.0e-11 75.9 50 74.0
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 3.0e-11 74.3 88 51.1
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 2.5e-10 71.2 91 48.4
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 2.1e-09 68.2 127 43.3
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 6.2e-09 66.6 188 34.0
ATR0820G116 Amborella trichopoda HOM05D005512 ORTHO05D006716 1.4e-08 65.5 184 37.0
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 6.8e-08 63.2 125 39.2
Mapoly0016s0098 Marchantia polymorpha HOM05D005512 ORTHO05D006716 9.9e-07 59.3 125 37.6
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 1.7e-06 58.5 236 30.1
Sc07g0005480 Simmondsia chinensis HOM05D005512 ORTHO05D006716 2.2e-06 58.2 173 34.7
SMO351G0354 Selaginella moellendorffii HOM05D005512 ORTHO05D006716 4.9e-06 57.0 106 39.6


User provided reference genes

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