Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.8e-277 957.6 509 100.0
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.8e-275 951.4 509 99.2
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 3.4e-273 944.5 509 98.2
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.4e-273 944.5 509 98.2
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.4e-273 944.5 509 98.2
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 2.8e-267 924.9 509 94.9
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 5.4e-263 910.6 493 98.2
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.8e-258 895.6 509 91.2
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 2.3e-258 895.2 509 91.4
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 6.8e-258 893.6 509 90.2
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 2.1e-251 872.1 509 87.2
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.8e-250 869.0 509 86.4
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.2e-249 866.3 509 87.4
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 1.5e-249 865.9 510 86.3
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.5e-249 865.9 509 87.2
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 5.8e-249 864.0 509 87.2
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 5.8e-249 864.0 510 86.7
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 2.9e-248 861.7 511 86.7
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 6.4e-248 860.5 510 86.5
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 1.4e-247 859.4 510 85.3
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.9e-247 859.0 509 86.8
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 2.4e-247 858.6 510 86.1
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 3.2e-247 858.2 510 85.3
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 4.1e-247 857.8 509 86.1
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 4.1e-247 857.8 509 85.5
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 5.4e-247 857.4 510 86.5
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 7.1e-247 857.1 510 86.5
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 7.1e-247 857.1 510 85.9
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 7.1e-247 857.1 511 85.7
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 7.1e-247 857.1 511 86.3
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 9.2e-247 856.7 510 86.7
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 1.2e-246 856.3 510 86.1
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 1.2e-246 856.3 511 86.5
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 1.2e-246 856.3 510 86.1
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.6e-246 855.9 510 85.9
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.6e-246 855.9 510 86.1
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 2.7e-246 855.1 510 85.3
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 3.5e-246 854.7 511 86.3
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 3.5e-246 854.7 510 85.1
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 4.6e-246 854.4 510 85.3
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 4.6e-246 854.4 511 86.1
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 6.0e-246 854.0 510 85.7
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 1.3e-245 852.8 510 85.3
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 1.3e-245 852.8 510 85.9
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 1.7e-245 852.4 511 85.3
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 3.0e-245 851.7 511 85.9
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 6.6e-245 850.5 510 84.7
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 8.6e-245 850.1 510 85.3
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 1.1e-244 849.7 510 85.1
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.9e-244 849.0 512 85.9
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 3.3e-244 848.2 510 86.7
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 3.3e-244 848.2 510 85.5
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 4.3e-244 847.8 510 84.9
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 3.6e-243 844.7 511 85.3
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 3.6e-243 844.7 510 85.1
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 8.1e-243 843.6 510 83.9
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 8.1e-243 843.6 510 84.1
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.1e-242 843.2 510 84.1
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.4e-242 842.8 510 85.3
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 1.4e-242 842.8 510 84.3
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 1.8e-242 842.4 510 83.7
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 3.1e-242 841.6 510 84.3
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 4.0e-242 841.3 510 84.1
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 6.8e-242 840.5 510 84.5
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 8.9e-242 840.1 510 83.5
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 1.5e-241 839.3 510 83.9
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.0e-241 839.0 510 83.1
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 3.4e-241 838.2 511 83.6
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 4.4e-241 837.8 510 82.7
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 5.8e-241 837.4 509 83.7
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 5.8e-241 837.4 510 84.1
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.2e-240 835.5 510 83.7
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.2e-240 835.5 510 83.7
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 2.2e-240 835.5 509 83.9
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 2.9e-240 835.1 510 82.9
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 2.9e-240 835.1 526 81.9
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 4.9e-240 834.3 510 83.5
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 6.4e-240 833.9 511 82.8
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 6.4e-240 833.9 509 84.5
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 8.4e-240 833.6 510 82.7
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 8.4e-240 833.6 510 84.1
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.1e-239 833.2 509 83.9
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 2.4e-239 832.0 510 82.4
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.2e-239 831.6 510 82.5
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 5.4e-239 830.9 509 84.1
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 2.7e-238 828.6 510 83.3
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 6.0e-238 827.4 510 82.2
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 1.0e-237 826.6 510 83.5
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 1.7e-237 825.9 549 78.7
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 5.1e-237 824.3 511 83.6
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 6.6e-237 823.9 511 83.2
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 6.6e-237 823.9 511 83.2
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 8.7e-237 823.5 510 82.0
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 1.1e-236 823.2 510 81.8
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 1.5e-236 822.8 510 81.8
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 1.9e-236 822.4 502 84.9
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 3.3e-236 821.6 510 81.6
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 5.6e-236 820.8 510 82.9
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.2e-235 819.7 509 81.1
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 1.6e-235 819.3 510 82.4
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 3.6e-235 818.1 512 82.2
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 1.4e-234 816.2 512 82.4
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 5.2e-234 814.3 510 81.2
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 4.4e-233 811.2 510 80.6
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 4.4e-233 811.2 524 80.3
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 9.3e-231 803.5 494 82.8
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 2.1e-230 802.4 494 84.4
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 3.5e-230 801.6 489 83.2
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 1.3e-229 799.7 511 81.2
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 3.0e-229 798.5 505 82.4
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 1.1e-228 796.6 510 79.6
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 1.1e-228 796.6 510 79.6
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 1.5e-228 796.2 510 79.4
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 3.3e-228 795.0 510 79.4
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 9.6e-228 793.5 493 83.2
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 1.1e-226 790.0 494 81.2
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 2.6e-225 785.4 472 85.8
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 2.6e-225 785.4 548 76.3
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 3.4e-225 785.0 556 75.9
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 2.2e-224 782.3 511 80.2
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 2.4e-223 778.9 509 79.2
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 3.0e-221 771.9 510 76.5
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 9.6e-220 766.9 511 77.5
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 6.9e-218 760.8 510 76.1
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 7.6e-217 757.3 509 77.6
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.9e-216 755.4 524 76.5
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.9e-216 755.4 524 76.5
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 1.4e-215 753.1 512 77.1
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 4.6e-206 721.5 440 83.0
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 5.5e-199 698.0 471 79.0
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 4.6e-198 694.9 511 72.8
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 1.2e-193 680.2 413 84.5
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 1.7e-192 676.4 503 72.0
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 1.4e-191 673.3 514 66.0
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.7e-188 660.6 503 68.4
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 8.2e-187 657.5 509 69.9
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 6.3e-179 631.3 468 71.8
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 4.2e-175 618.6 514 60.3
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 6.1e-174 614.8 375 84.0
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 6.5e-168 594.7 364 82.7
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 7.2e-167 591.3 522 59.8
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.6e-166 589.0 494 60.3
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 1.0e-165 587.4 364 83.8
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 5.2e-165 585.1 511 58.7
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 5.4e-162 575.1 379 78.6
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 9.1e-162 574.3 504 63.9
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 2.8e-158 562.8 346 83.5
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.8e-154 550.1 499 56.1
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 1.0e-152 544.3 325 85.8
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 4.6e-145 518.8 307 87.3
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.0e-145 518.5 456 65.6
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.0e-136 491.1 284 89.4
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 1.1e-133 481.1 383 65.0
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 6.4e-115 418.7 514 45.5
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.0e-112 411.4 254 82.3
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.6e-111 405.6 245 86.5
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.2e-107 393.7 386 56.0
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 9.3e-106 388.3 485 44.5
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 5.3e-101 372.5 279 72.4
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 2.8e-94 350.1 520 37.9
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.8e-77 294.3 199 79.9
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.8e-72 277.7 343 47.8
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 2.0e-68 264.2 502 39.8
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.8e-61 241.1 288 48.3
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.6e-60 238.0 144 84.0
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 9.4e-58 228.8 359 42.6
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 2.4e-45 187.6 117 75.2
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.1e-45 187.2 206 51.9
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.0e-43 182.2 154 70.1
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.0e-43 179.9 197 51.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 2.9e-35 154.1 106 74.5
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.8e-31 139.0 119 57.1
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 1.7e-27 128.3 82 82.9
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 7.8e-20 102.8 121 56.2
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 2.3e-11 74.7 63 60.3
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 8.1e-09 66.2 37 83.8
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 8.9e-08 62.8 96 47.9
PSO541G6111 Papaver somniferum HOM05D003907 ORTHO05D305003 5.8e-07 60.1 38 78.9


User provided reference genes

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