Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 6.9e-257 890.2 469 100.0
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 9.1e-225 783.5 435 93.1
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.0e-223 780.0 418 95.7
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 1.7e-223 779.2 435 92.9
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.6e-211 738.8 417 92.1
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 7.5e-211 737.3 419 90.7
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 8.0e-205 717.2 419 89.3
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.3e-199 699.9 417 85.6
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.1e-198 696.8 421 84.1
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 3.3e-198 695.3 464 79.5
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 4.0e-196 688.3 421 83.1
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 3.3e-190 668.7 410 81.7
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.6e-189 665.2 416 81.0
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 8.1e-189 664.1 406 82.3
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.1e-188 663.7 409 82.2
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 3.1e-188 662.1 436 78.0
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 5.2e-188 661.4 412 80.1
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 6.8e-188 661.0 415 80.0
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 8.9e-188 660.6 441 76.6
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 7.6e-187 657.5 414 80.7
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 9.9e-187 657.1 435 76.3
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 9.9e-187 657.1 414 80.4
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 1.3e-186 656.8 431 77.7
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 2.2e-186 656.0 417 79.1
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.9e-186 655.6 408 80.1
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 3.8e-186 655.2 418 79.2
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 3.8e-186 655.2 406 81.3
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 8.4e-186 654.1 435 76.1
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.1e-185 653.7 417 77.9
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 2.4e-185 652.5 422 79.1
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 2.4e-185 652.5 409 79.7
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 3.2e-185 652.1 417 78.9
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 3.2e-185 652.1 409 80.4
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 5.4e-185 651.4 415 78.8
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.2e-184 650.2 418 78.7
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.1e-184 649.4 409 79.7
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.7e-184 649.0 417 79.1
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.5e-184 648.7 410 79.5
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.5e-184 648.7 414 78.5
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 2.3e-183 646.0 420 78.8
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.9e-183 645.2 416 78.6
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.9e-183 645.2 420 77.6
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 6.6e-183 644.4 409 78.5
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 8.7e-183 644.0 439 74.0
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 8.7e-183 644.0 409 78.7
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.5e-182 643.3 417 77.9
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.5e-182 643.3 420 77.1
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 1.5e-182 643.3 443 74.7
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.5e-182 642.5 418 78.0
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 4.3e-182 641.7 410 79.0
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 5.6e-182 641.3 420 77.9
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.6e-181 638.6 425 76.5
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 3.6e-181 638.6 410 78.8
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 6.2e-181 637.9 407 78.4
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 6.2e-181 637.9 441 75.3
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 3.1e-180 635.6 407 78.9
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 4.0e-180 635.2 415 76.9
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 4.0e-180 635.2 406 77.6
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 5.3e-180 634.8 391 82.4
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 5.3e-180 634.8 406 78.6
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.0e-179 632.9 406 77.1
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.8e-179 631.3 440 75.0
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 1.3e-178 630.2 438 74.9
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 2.9e-178 629.0 418 75.8
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 9.3e-177 624.0 425 75.3
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 2.7e-176 622.5 412 76.9
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 6.0e-176 621.3 420 76.4
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 5.1e-175 618.2 416 76.0
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 6.6e-175 617.8 403 78.4
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 6.6e-175 617.8 420 76.4
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 2.5e-174 615.9 400 78.0
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 9.6e-174 614.0 413 74.6
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.6e-173 612.1 409 74.3
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 3.6e-173 612.1 409 75.3
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 8.1e-173 610.9 439 71.8
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.1e-172 610.5 409 74.3
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.1e-172 610.5 423 74.2
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 1.1e-172 610.5 409 75.1
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 1.8e-172 609.8 406 75.4
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 5.3e-172 608.2 440 71.1
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 5.3e-172 608.2 409 74.3
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 5.3e-172 608.2 406 74.6
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 9.0e-172 607.4 406 75.1
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 9.0e-172 607.4 411 74.9
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 2.0e-171 606.3 403 75.7
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 3.4e-171 605.5 424 71.7
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 4.5e-171 605.1 406 73.6
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 4.5e-171 605.1 438 69.9
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 4.5e-171 605.1 424 71.7
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 4.5e-171 605.1 438 69.9
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 4.5e-171 605.1 438 69.9
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 4.5e-171 605.1 424 71.7
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 4.5e-171 605.1 406 74.1
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 5.8e-171 604.7 406 73.9
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 7.6e-171 604.4 406 73.9
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 9.9e-171 604.0 424 71.5
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 9.9e-171 604.0 414 72.7
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.2e-170 602.8 406 73.9
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 2.9e-170 602.4 426 72.5
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 6.4e-170 601.3 394 76.9
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.1e-169 600.5 415 73.0
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.1e-169 600.5 401 75.1
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.9e-169 599.7 420 72.4
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 5.4e-169 598.2 394 76.4
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 7.1e-169 597.8 406 73.4
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 1.6e-168 596.7 417 71.5
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.1e-168 596.3 394 75.9
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 2.7e-168 595.9 409 73.1
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 6.0e-168 594.7 422 72.7
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 7.9e-168 594.3 409 74.1
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 7.9e-168 594.3 435 71.3
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 2.3e-167 592.8 415 72.8
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.7e-167 591.3 412 72.8
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 1.1e-166 590.5 397 74.3
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 2.8e-165 585.9 384 76.8
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 4.5e-163 578.6 386 74.1
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 7.6e-163 577.8 386 75.9
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 7.6e-163 577.8 389 74.6
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 9.9e-163 577.4 352 82.1
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 3.8e-162 575.5 409 71.9
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 4.9e-162 575.1 414 72.5
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 6.4e-162 574.7 394 75.1
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.1e-161 573.9 420 69.3
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 7.1e-161 571.2 379 77.6
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.0e-159 567.4 440 68.6
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 3.0e-159 565.8 454 64.8
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 8.7e-159 564.3 411 70.8
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 4.3e-158 562.0 419 68.3
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 7.4e-158 561.2 427 73.1
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 6.9e-156 554.7 417 67.9
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.0e-155 553.1 455 66.4
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 1.3e-149 533.9 339 77.9
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.2e-149 533.1 391 67.3
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 2.9e-146 522.7 425 62.6
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 8.5e-146 521.2 409 64.3
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 4.6e-144 515.4 337 77.2
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.8e-143 513.5 412 63.3
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.0e-142 510.0 453 62.3
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.3e-141 507.3 418 63.4
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 2.6e-139 499.6 391 68.0
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 3.2e-137 492.7 357 72.0
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 3.0e-135 486.1 344 71.2
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 3.9e-135 485.7 416 60.1
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 1.2e-131 474.2 420 63.3
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.1e-129 467.6 408 60.0
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 9.1e-124 448.0 311 72.3
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 5.9e-123 445.3 406 58.1
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.5e-121 439.9 386 60.9
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.7e-117 426.0 258 82.2
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.4e-110 402.9 352 60.5
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.0e-107 393.7 288 68.8
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.2e-102 377.9 248 75.8
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 3.1e-95 353.2 228 79.8
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.7e-93 347.4 422 46.7
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.0e-90 338.2 400 47.2
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 3.6e-88 329.7 391 48.8
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 1.6e-83 314.3 290 55.9
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 8.6e-82 308.5 341 54.0
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.1e-80 303.9 196 75.5
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 4.6e-67 259.6 151 82.8
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 7.1e-60 235.7 239 55.6
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 2.3e-58 230.7 308 42.9
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 2.3e-58 230.7 317 43.5
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.4e-52 210.7 321 39.6
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 5.4e-52 209.5 236 50.0
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 6.0e-51 206.1 425 36.7
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 7.4e-49 199.1 137 72.3
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.2e-44 183.3 199 52.3
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 1.1e-36 158.7 107 73.8
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 6.9e-31 139.4 75 89.3
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 2.1e-27 127.9 88 71.6
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.0e-25 121.3 69 84.1
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.1e-20 105.5 74 67.6
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 9.4e-20 102.4 61 77.0
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 7.9e-19 99.4 54 83.3
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 4.8e-16 90.1 107 44.9
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 6.3e-16 89.7 81 55.6
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 2.4e-15 87.8 55 72.7
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 7.0e-15 86.3 123 43.1
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 2.2e-13 81.3 60 68.3
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 2.5e-12 77.8 204 37.7
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 7.0e-07 59.7 55 58.2
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 4.5e-06 57.0 35 71.4


User provided reference genes

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