Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.3e-93 345.5 172 100.0
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 3.6e-86 321.6 171 94.2
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 6.2e-86 320.9 172 94.2
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.9e-83 312.0 171 91.8
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 9.2e-82 307.0 163 94.5
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 7.9e-49 197.6 176 65.3
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 4.2e-18 95.5 131 44.3
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 7.4e-15 84.7 151 42.4
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 1.3e-14 84.0 124 42.7
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 8.2e-14 81.3 134 44.8
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 1.1e-13 80.9 127 42.5
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 6.9e-13 78.2 71 57.7
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 6.9e-13 78.2 109 42.2
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 9.1e-13 77.8 123 42.3
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.2e-12 77.4 122 45.1
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.2e-12 77.4 122 45.1
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 1.5e-12 77.0 132 45.5
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 2.6e-12 76.3 102 46.1
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 2.6e-12 76.3 105 46.7
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 7.7e-12 74.7 105 45.7
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 7.7e-12 74.7 120 41.7
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 1.3e-11 73.9 133 37.6
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 1.7e-11 73.6 68 61.8
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 2.2e-11 73.2 86 50.0
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 3.8e-11 72.4 127 42.5
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 3.8e-11 72.4 126 41.3
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 5.0e-11 72.0 108 47.2
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 6.5e-11 71.6 86 53.5
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 8.5e-11 71.2 86 47.7
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.1e-10 70.9 86 53.5
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 1.9e-10 70.1 69 53.6
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 2.5e-10 69.7 134 33.6
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 3.2e-10 69.3 84 47.6
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 3.2e-10 69.3 98 44.9
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 7.2e-10 68.2 127 37.0
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 9.4e-10 67.8 132 40.9
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 1.6e-09 67.0 135 40.0
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 2.1e-09 66.6 76 50.0
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 2.7e-09 66.2 177 32.8
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 2.7e-09 66.2 66 56.1
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 3.6e-09 65.9 100 44.0
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 3.6e-09 65.9 138 37.0
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 6.1e-09 65.1 127 39.4
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 8.0e-09 64.7 170 31.8
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 8.0e-09 64.7 73 52.1
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 1.0e-08 64.3 126 37.3
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.4e-08 63.9 113 38.1
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 1.4e-08 63.9 77 54.5
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 1.4e-08 63.9 144 34.7
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 1.8e-08 63.5 125 39.2
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 1.8e-08 63.5 135 32.6
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 2.3e-08 63.2 108 39.8
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 3.9e-08 62.4 125 38.4
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 5.2e-08 62.0 127 37.0
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 5.2e-08 62.0 126 37.3
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 6.7e-08 61.6 89 43.8
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 6.7e-08 61.6 54 53.7
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 6.7e-08 61.6 68 51.5
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 8.8e-08 61.2 68 51.5
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 8.8e-08 61.2 68 51.5
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 1.1e-07 60.8 78 48.7
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 1.1e-07 60.8 78 48.7
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 1.5e-07 60.5 104 40.4
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 1.5e-07 60.5 78 44.9
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 2.0e-07 60.1 37 64.9
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 2.6e-07 59.7 112 38.4
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 2.6e-07 59.7 105 40.0
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 2.6e-07 59.7 87 42.5
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 2.6e-07 59.7 120 37.5
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 3.3e-07 59.3 68 51.5
Phvul.004G061700 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.3e-07 59.3 69 44.9
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 3.3e-07 59.3 84 47.6
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 4.4e-07 58.9 69 43.5
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 4.4e-07 58.9 134 38.8
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 5.7e-07 58.5 84 41.7
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 7.4e-07 58.2 150 32.7
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 2.2e-06 56.6 153 30.7
Gorai.006G035000 Gossypium raimondii HOM05D007296 ORTHO05D009201 2.2e-06 56.6 39 61.5
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 2.8e-06 56.2 104 39.4
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 3.7e-06 55.8 67 46.3
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 3.7e-06 55.8 67 46.3
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 3.7e-06 55.8 123 36.6
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 4.8e-06 55.5 125 32.0
Zm00001eb141720 Zea mays HOM05D024678 ORTHO05D025976 4.8e-06 55.5 70 45.7
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 6.3e-06 55.1 78 48.7
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 8.2e-06 54.7 69 46.4


User provided reference genes

Program Settings