Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.7e-59 230.3 121 100.0
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.9e-58 228.4 121 98.3
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.9e-58 228.4 121 98.3
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.2e-54 216.5 121 95.9
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 5.7e-54 214.2 121 91.7
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 2.7e-43 178.7 121 80.2
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.2e-40 169.9 121 81.0
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 1.7e-37 159.5 121 77.7
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 4.1e-36 154.8 118 68.6
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 4.5e-35 151.4 118 66.9
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 5.9e-35 151.0 116 69.8
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.0e-34 150.2 121 71.9
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.5e-33 145.6 118 67.8
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 4.3e-33 144.8 113 67.3
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.3e-33 144.8 121 64.5
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 9.5e-33 143.7 113 66.4
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.6e-32 142.9 121 61.2
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.1e-32 142.5 118 63.6
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.8e-32 142.1 120 64.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 8.0e-32 140.6 120 63.3
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.0e-31 140.2 121 63.6
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.4e-31 139.8 118 61.9
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 2.3e-31 139.0 121 62.8
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.3e-31 139.0 121 62.8
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 2.3e-31 139.0 113 67.3
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 4.0e-31 138.3 121 59.5
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.0e-31 138.3 121 64.5
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 5.2e-31 137.9 122 61.5
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 6.8e-31 137.5 124 66.9
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.9e-31 137.1 82 81.7
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.2e-30 136.7 122 64.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.5e-30 136.3 121 62.8
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.5e-30 136.3 121 65.3
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.5e-30 136.3 121 65.3
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.5e-30 136.3 120 61.7
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 1.5e-30 136.3 121 62.0
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 2.0e-30 136.0 121 62.8
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.0e-30 136.0 124 62.1
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.0e-30 136.0 84 78.6
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 2.0e-30 136.0 118 60.2
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.6e-30 135.6 121 64.5
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.6e-30 135.6 122 63.9
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 4.4e-30 134.8 121 62.0
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.4e-30 134.8 82 80.5
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 4.4e-30 134.8 124 58.9
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 4.4e-30 134.8 123 64.2
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.3e-29 133.3 120 64.2
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.3e-29 133.3 122 62.3
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.3e-29 133.3 121 62.8
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.3e-29 133.3 118 63.6
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 1.3e-29 133.3 118 65.3
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 1.3e-29 133.3 120 60.0
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.2e-29 132.5 121 63.6
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.2e-29 132.5 121 62.8
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 2.9e-29 132.1 116 63.8
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 2.9e-29 132.1 119 62.2
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.9e-29 132.1 121 64.5
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.7e-29 131.7 121 62.0
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 3.7e-29 131.7 123 65.0
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 4.9e-29 131.3 119 64.7
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 6.4e-29 131.0 126 61.1
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 6.4e-29 131.0 114 66.7
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.1e-28 130.2 124 62.9
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-28 130.2 125 62.4
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-28 130.2 124 62.9
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.1e-28 130.2 124 62.9
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.1e-28 130.2 120 61.7
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.1e-28 130.2 114 63.2
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.1e-28 130.2 82 75.6
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 1.4e-28 129.8 114 63.2
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.4e-28 129.8 117 59.8
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.4e-28 129.8 117 59.8
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.8e-28 129.4 121 61.2
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 2.4e-28 129.0 124 63.7
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 2.4e-28 129.0 121 58.7
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 3.2e-28 128.6 124 62.1
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 3.2e-28 128.6 113 62.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 3.2e-28 128.6 113 62.8
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.1e-28 128.3 121 61.2
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 7.0e-28 127.5 123 63.4
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 7.0e-28 127.5 120 60.8
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 7.0e-28 127.5 120 61.7
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 7.0e-28 127.5 124 61.3
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 7.0e-28 127.5 93 67.7
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 9.2e-28 127.1 113 62.8
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.2e-27 126.7 119 61.3
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.2e-27 126.7 118 61.0
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.2e-27 126.7 119 61.3
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.2e-27 126.7 119 61.3
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.2e-27 126.7 118 61.0
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.2e-27 126.7 119 61.3
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.2e-27 126.7 122 59.8
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.2e-27 126.7 122 57.4
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.6e-27 126.3 120 60.8
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.6e-27 126.3 113 60.2
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 2.0e-27 125.9 122 60.7
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.0e-27 125.9 121 59.5
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 2.0e-27 125.9 115 59.1
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 4.6e-27 124.8 118 57.6
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 4.6e-27 124.8 119 58.8
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 5.9e-27 124.4 126 60.3
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 7.8e-27 124.0 121 58.7
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 7.8e-27 124.0 121 54.5
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.3e-26 123.2 119 58.0
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.7e-26 122.9 121 58.7
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.7e-26 122.9 132 54.5
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 3.0e-26 122.1 118 59.3
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 5.0e-26 121.3 113 58.4
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.5e-25 119.0 144 53.5
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 4.3e-25 118.2 151 50.3
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 5.6e-25 117.9 73 76.7
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.1e-24 115.9 122 56.6
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 4.7e-24 114.8 118 52.5
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.0e-23 113.6 70 78.6
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 3.1e-23 112.1 68 76.5
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 4.0e-23 111.7 96 60.4
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.2e-23 111.3 93 61.3
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 8.9e-23 110.5 125 53.6
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 3.4e-22 108.6 61 80.3
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 3.7e-21 105.1 93 60.2
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.1e-20 103.6 73 65.8
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.9e-20 102.8 75 66.7
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.6e-19 99.8 116 45.7
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 2.3e-18 95.9 57 77.2
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.6e-18 94.0 64 71.9
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.5e-17 93.2 87 54.0
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 5.6e-17 91.3 74 62.2
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.2e-16 90.1 98 52.0
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.6e-16 89.7 82 56.1
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.1e-16 89.4 98 55.1
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 3.6e-16 88.6 120 47.5
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.1e-16 87.4 57 75.4
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 1.3e-13 80.1 87 51.7
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 2.2e-13 79.3 109 45.0
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 7.1e-12 74.3 133 39.1
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.7e-11 72.4 44 70.5
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 1.5e-06 56.6 87 37.9


User provided reference genes

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