Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.6e-43 177.6 94 100.0
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.8e-40 167.5 92 96.7
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.2e-40 167.2 92 96.7
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.4e-39 165.2 94 93.6
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.5e-38 161.0 92 92.4
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 1.9e-36 155.6 92 89.1
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 2.8e-32 141.7 90 81.1
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 3.1e-31 138.3 90 80.0
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.7e-29 132.5 89 78.7
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.9e-28 129.0 89 71.9
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.2e-27 126.3 89 68.5
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 4.6e-27 124.4 88 69.3
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 6.0e-27 124.0 92 65.2
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 7.9e-27 123.6 92 65.2
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 1.0e-26 123.2 86 69.8
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.0e-26 123.2 90 66.7
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.8e-26 122.5 88 68.2
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 3.9e-26 121.3 93 69.9
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.9e-26 121.3 92 63.0
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 5.1e-26 120.9 92 64.1
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 5.1e-26 120.9 88 71.6
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 5.1e-26 120.9 89 69.7
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 6.7e-26 120.6 92 62.0
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 6.7e-26 120.6 92 63.0
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 8.7e-26 120.2 86 68.6
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.9e-25 119.0 88 64.8
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 3.3e-25 118.2 85 70.6
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 3.3e-25 118.2 89 65.2
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 5.6e-25 117.5 92 62.0
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 5.6e-25 117.5 90 67.8
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 5.6e-25 117.5 83 68.7
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 7.4e-25 117.1 88 65.9
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 7.4e-25 117.1 93 61.3
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 7.4e-25 117.1 92 65.2
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 9.6e-25 116.7 88 65.9
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 9.6e-25 116.7 88 65.9
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 9.6e-25 116.7 88 65.9
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.3e-24 116.3 85 67.1
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.3e-24 116.3 92 60.9
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.3e-24 116.3 88 67.0
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 1.6e-24 115.9 82 64.6
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 1.6e-24 115.9 85 63.5
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 1.6e-24 115.9 89 65.2
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 2.8e-24 115.2 97 60.8
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 2.8e-24 115.2 93 62.4
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 2.8e-24 115.2 90 61.1
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 2.8e-24 115.2 88 64.8
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 2.8e-24 115.2 90 61.1
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 3.7e-24 114.8 90 61.1
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 4.8e-24 114.4 88 61.4
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 4.8e-24 114.4 85 64.7
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 4.8e-24 114.4 87 66.7
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 6.2e-24 114.0 90 64.4
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 6.2e-24 114.0 85 64.7
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 6.2e-24 114.0 87 66.7
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 8.2e-24 113.6 84 67.9
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 8.2e-24 113.6 89 65.2
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.1e-23 113.2 85 63.5
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.4e-23 112.8 88 63.6
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.8e-23 112.5 90 61.1
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 1.8e-23 112.5 91 63.7
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.8e-23 112.5 88 62.5
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 2.4e-23 112.1 85 65.9
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 3.1e-23 111.7 86 65.1
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.1e-23 111.7 84 64.3
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 3.1e-23 111.7 88 62.5
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 5.3e-23 110.9 87 64.4
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 5.3e-23 110.9 87 63.2
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 9.0e-23 110.2 90 60.0
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 9.0e-23 110.2 90 60.0
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 1.2e-22 109.8 90 62.2
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 1.2e-22 109.8 88 63.6
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 2.0e-22 109.0 89 61.8
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 2.0e-22 109.0 89 61.8
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 3.4e-22 108.2 87 59.8
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 3.4e-22 108.2 91 58.2
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 4.5e-22 107.8 87 63.2
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 4.5e-22 107.8 88 56.8
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 5.8e-22 107.5 90 61.1
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.3e-21 106.3 94 62.8
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.3e-21 106.3 89 61.8
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.7e-21 105.9 89 58.4
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 2.9e-21 105.1 88 58.0
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 3.8e-21 104.8 91 59.3
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 4.9e-21 104.4 88 55.7
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 6.5e-21 104.0 85 61.2
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 8.4e-21 103.6 91 58.2
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 1.4e-20 102.8 90 57.8
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 5.5e-20 100.9 86 54.7
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 9.3e-20 100.1 78 61.5
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 1.6e-19 99.4 85 63.5
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.1e-19 99.0 82 63.4
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 2.7e-19 98.6 80 63.8
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 1.8e-18 95.9 75 61.3
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.5e-17 92.8 80 58.8
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 2.5e-17 92.0 87 52.9
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.7e-17 90.9 71 62.0
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.2e-16 89.0 74 59.5
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.2e-16 89.0 90 46.7
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 2.8e-16 88.6 74 58.1
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 6.3e-16 87.4 83 51.8
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.8e-15 85.9 83 51.8
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.8e-15 85.9 83 51.8
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 3.1e-15 85.1 66 62.1
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 6.9e-15 84.0 62 59.7
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 9.0e-15 83.6 62 66.1
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-14 83.2 82 48.8
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 1.2e-14 83.2 82 48.8
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.5e-14 82.8 83 50.6
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.5e-14 82.8 90 48.9
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 2.0e-14 82.4 83 48.2
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 2.0e-14 82.4 69 53.6
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 3.4e-14 81.6 83 48.2
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 3.4e-14 81.6 83 48.2
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 3.4e-14 81.6 83 49.4
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 5.9e-14 80.9 83 49.4
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 7.7e-14 80.5 83 47.0
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 3.8e-13 78.2 82 46.3
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 3.8e-13 78.2 82 46.3
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 5.0e-13 77.8 83 45.8
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 8.5e-13 77.0 82 45.1
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 8.5e-13 77.0 82 46.3
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 8.5e-13 77.0 82 45.1
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 1.1e-12 76.6 85 48.2
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-12 76.6 82 46.3
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 1.1e-12 76.6 59 62.7
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 1.4e-12 76.3 78 48.7
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 1.4e-12 76.3 78 48.7
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 1.4e-12 76.3 82 45.1
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.4e-12 76.3 80 46.2
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.9e-12 75.9 82 45.1
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 1.9e-12 75.9 78 48.7
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.9e-12 75.9 82 45.1
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.9e-12 75.9 93 44.1
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.2e-12 75.1 88 45.5
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 4.2e-12 74.7 78 47.4
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 7.2e-12 73.9 82 45.1
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 7.2e-12 73.9 82 45.1
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 7.2e-12 73.9 82 45.1
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 9.4e-12 73.6 82 42.7
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 9.4e-12 73.6 82 43.9
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 8.8e-10 67.0 81 48.1
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.0e-09 65.9 65 49.2
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 3.3e-09 65.1 86 46.5
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 2.2e-08 62.4 76 46.1
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 2.8e-08 62.0 59 61.0
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.5e-06 56.2 75 42.7


User provided reference genes

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