Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 0.0e+00 1560.8 810 100.0
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 0.0e+00 1432.2 811 93.6
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 0.0e+00 1342.8 811 88.9
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 0.0e+00 1282.3 811 85.5
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 0.0e+00 1217.2 816 81.6
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 0.0e+00 1180.2 645 95.8
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 0.0e+00 1109.4 833 72.7
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 0.0e+00 1103.6 829 73.1
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 0.0e+00 1103.2 834 72.9
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 3.2e-294 1015.0 834 67.1
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.1e-291 1006.5 834 66.1
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 5.2e-284 981.1 823 66.1
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 2.5e-278 962.2 830 63.9
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 6.1e-277 957.6 826 63.2
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 2.2e-274 949.1 830 63.4
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.5e-270 936.4 832 63.3
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.5e-270 936.4 811 64.9
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.2e-269 933.3 828 62.8
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 2.1e-269 932.6 794 65.9
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.0e-267 926.0 815 62.9
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 6.3e-266 921.0 821 62.5
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 6.3e-266 921.0 827 63.2
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 8.3e-266 920.6 810 63.1
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 8.3e-266 920.6 824 61.4
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.4e-265 919.8 821 62.2
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.4e-265 919.1 821 62.4
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 8.6e-263 910.6 811 61.8
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 1.5e-262 909.8 818 61.2
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 1.9e-262 909.4 816 61.5
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 2.5e-262 909.1 810 61.4
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 2.8e-261 905.6 827 62.0
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 6.1e-261 904.4 811 62.1
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 5.2e-260 901.4 858 59.4
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 3.4e-259 898.7 820 60.2
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.9e-258 895.6 856 59.6
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 6.4e-258 894.4 811 61.8
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 2.4e-257 892.5 823 59.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 3.5e-256 888.6 817 60.7
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 5.9e-256 887.9 814 60.4
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 6.6e-255 884.4 817 59.0
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 6.6e-255 884.4 810 60.5
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.7e-250 869.8 841 57.4
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 3.7e-250 868.6 805 60.2
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 1.4e-249 866.7 978 54.5
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 2.0e-248 862.8 823 57.7
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.7e-247 859.8 834 59.1
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 7.3e-246 854.4 827 60.1
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 2.1e-245 852.8 826 58.7
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 3.6e-245 852.0 825 58.1
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 3.1e-244 849.0 810 59.0
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 1.3e-242 843.6 835 56.9
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 1.1e-241 840.5 819 58.4
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 1.1e-236 823.9 834 56.5
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.2e-235 820.5 806 56.8
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 4.4e-235 818.5 755 60.0
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.1e-233 813.9 846 55.3
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 3.2e-233 812.4 818 54.8
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.1e-233 812.0 825 55.0
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 7.1e-233 811.2 861 55.7
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.6e-232 810.1 831 54.6
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 5.1e-231 805.1 825 54.5
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 5.6e-230 801.6 812 55.5
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.5e-227 793.5 813 55.5
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.2e-226 789.6 830 54.3
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 4.2e-225 785.4 829 54.3
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 6.6e-223 778.1 806 54.1
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 2.5e-222 776.2 823 53.0
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 2.1e-221 773.1 849 53.4
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 8.1e-221 771.2 806 54.0
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 4.0e-220 768.8 811 54.5
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.4e-217 759.6 766 56.0
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.9e-214 750.0 810 53.1
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 4.8e-213 745.3 838 52.3
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 2.6e-211 739.6 816 53.3
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 2.9e-210 736.1 798 53.0
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 3.8e-210 735.7 839 52.0
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.9e-209 733.4 806 52.6
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.9e-209 733.4 806 52.9
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 3.2e-209 732.6 816 53.2
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 7.1e-209 731.5 796 53.3
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.3e-207 726.5 805 51.7
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.9e-206 723.4 812 52.3
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.9e-206 723.4 812 52.5
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 4.9e-202 708.8 846 48.3
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.5e-198 697.2 812 51.5
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 6.3e-197 691.8 845 49.5
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.6e-192 677.2 836 47.8
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 9.7e-190 667.9 824 50.2
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 3.7e-189 666.0 479 72.4
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 3.1e-188 662.9 814 49.3
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 2.6e-187 659.8 799 46.2
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.4e-180 637.5 814 48.6
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.4e-180 637.5 814 48.6
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.4e-180 637.5 814 48.6
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.5e-174 617.5 806 47.0
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 8.2e-173 611.7 607 57.0
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 5.7e-166 589.0 703 50.6
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.8e-164 583.9 774 47.7
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 2.7e-163 580.1 445 67.6
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 2.1e-160 570.5 574 60.1
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 2.0e-158 563.9 815 41.8
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 4.8e-157 559.3 668 50.4
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.7e-154 550.8 483 59.2
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 1.1e-153 548.1 761 44.2
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 7.2e-153 545.4 903 39.1
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 1.2e-150 538.1 640 46.4
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 8.0e-144 515.4 689 48.0
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.6e-139 501.1 795 38.7
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 4.3e-129 466.5 603 49.4
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 5.4e-124 449.5 260 85.0
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.3e-117 428.3 569 47.1
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.5e-94 351.7 551 45.2
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.8e-93 347.1 355 55.2
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 8.7e-90 335.9 643 36.4
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 3.3e-81 307.4 194 77.3
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 8.8e-58 229.6 143 76.2
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 3.7e-56 224.2 267 53.2
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 4.0e-50 204.1 142 68.3
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 5.2e-50 203.8 142 68.3
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.8e-48 197.2 118 82.2
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.1e-47 194.5 199 57.8
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 2.7e-46 191.4 143 64.3
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 6.5e-45 186.8 135 66.7
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 7.0e-39 166.8 99 79.8
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 7.2e-36 156.8 114 69.3
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.5e-33 149.1 172 52.9
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-29 133.3 157 41.4
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 8.0e-27 126.7 74 82.4
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 2.3e-26 125.2 100 62.0
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 9.8e-25 119.8 91 65.9
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.3e-21 109.4 508 24.0
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.7e-21 109.0 292 28.4
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 3.9e-21 107.8 90 55.6
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 1.9e-20 105.5 105 51.4
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 1.1e-15 89.7 555 21.4
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 6.6e-13 80.5 123 39.0
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 8.6e-13 80.1 239 29.3
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-12 79.3 58 65.5
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.3e-12 78.2 47 80.9
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 1.3e-08 66.2 65 58.5
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.2e-08 65.5 70 52.9


User provided reference genes

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