Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.8e-127 458.8 256 100.0
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.8e-95 351.7 310 68.1
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.6e-92 341.3 310 66.5
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 1.8e-89 333.2 349 61.6
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 9.8e-88 327.4 310 64.8
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 9.8e-88 327.4 310 64.8
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 9.2e-86 320.9 310 64.8
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.7e-85 319.3 310 64.8
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 2.3e-84 316.2 310 64.8
MD12G1224900 Malus domestica HOM05D006966 ORTHO05D008111 1.1e-25 121.3 354 36.2
MD04G1210600 Malus domestica HOM05D006966 ORTHO05D008111 5.8e-24 115.5 389 34.4
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 6.5e-23 112.1 126 55.6
Prupe.6G331500 Prunus persica HOM05D006966 ORTHO05D008111 7.1e-22 108.6 148 44.6
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 9.3e-22 108.2 85 67.1
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 2.7e-21 106.7 124 50.8
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 4.6e-21 105.9 111 55.0
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 3.9e-20 102.8 116 50.9
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 1.9e-19 100.5 114 52.6
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 3.3e-19 99.8 67 74.6
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 9.7e-19 98.2 69 73.9
CsaV3_2G004840 Cucumis sativus L. HOM05D006966 ORTHO05D008111 9.7e-19 98.2 64 75.0
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 1.3e-18 97.8 83 63.9
ClCG02G016130 Citrullus lanatus HOM05D006966 ORTHO05D008111 1.6e-18 97.4 208 39.9
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 1.6e-18 97.4 113 50.4
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 2.8e-18 96.7 141 43.3
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 3.7e-18 96.3 115 47.8
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 3.7e-18 96.3 111 51.4
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.7e-18 96.3 110 50.9
Nitab4.5_0002848g0060 Nicotiana tabacum HOM05D006966 ORTHO05D008111 4.8e-18 95.9 117 47.9
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 6.3e-18 95.5 146 46.6
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 6.3e-18 95.5 158 48.7
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 6.3e-18 95.5 61 77.0
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 8.2e-18 95.1 58 75.9
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 8.2e-18 95.1 110 52.7
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 8.2e-18 95.1 112 49.1
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 1.1e-17 94.7 60 75.0
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 1.1e-17 94.7 110 50.0
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 1.1e-17 94.7 112 54.5
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 1.1e-17 94.7 112 54.5
COL.COLO4_13529 Corchorus olitorius HOM05D006966 ORTHO05D008111 1.8e-17 94.0 120 45.8
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 1.8e-17 94.0 68 72.1
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 4.1e-17 92.8 110 46.4
Lj1g0017885 Lotus japonicus HOM05D006966 ORTHO05D008111 5.3e-17 92.4 62 74.2
Medtr7g113950 Medicago truncatula HOM05D006966 ORTHO05D008111 6.9e-17 92.0 59 74.6
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 9.0e-17 91.7 122 49.2
MELO3C004314.2 Cucumis melo HOM05D006966 ORTHO05D008111 2.0e-16 90.5 228 35.5
Peaxi162Scf00434g00052 Petunia axillaris HOM05D006966 ORTHO05D008111 4.5e-16 89.4 116 50.9
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 5.9e-16 89.0 127 44.1
PGSC0003DMG400028568 Solanum tuberosum HOM05D006966 ORTHO05D008111 5.9e-16 89.0 64 65.6
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 1.0e-15 88.2 63 69.8
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 1.0e-15 88.2 62 66.1
Manes.08G123800 Manihot esculenta HOM05D006966 ORTHO05D008111 1.0e-15 88.2 281 35.6
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 1.3e-15 87.8 59 71.2
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 1.3e-15 87.8 76 60.5
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 2.2e-15 87.0 68 64.7
Aa31LG2G11900 Aethionema arabicum HOM05D006966 ORTHO05D008111 2.9e-15 86.7 88 54.5
SpUn0002_0320 Schrenkiella parvula HOM05D006966 ORTHO05D008111 2.9e-15 86.7 73 61.6
TWI12G1291 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 8.5e-15 85.1 108 49.1
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 1.1e-14 84.7 70 62.9
Sed0007833 Sechium edule HOM05D006966 ORTHO05D008111 1.1e-14 84.7 75 57.3
TWI36G1607 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 1.1e-14 84.7 52 73.1
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 1.4e-14 84.3 91 50.5
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 1.4e-14 84.3 75 61.3
Carub.0002s0866 Capsella rubella HOM05D006966 ORTHO05D008111 1.9e-14 84.0 97 51.5
QL03p004162 Quercus lobata HOM05D006966 ORTHO05D008111 1.9e-14 84.0 82 58.5
Gohir.D11G272300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 4.2e-14 82.8 58 67.2
CARHR055880 Cardamine hirsuta HOM05D006966 ORTHO05D008111 7.2e-14 82.0 129 41.9
MBI19_g33142_MAGBIO Magnolia biondii HOM05D006966 ORTHO05D008111 7.2e-14 82.0 110 41.8
TAR362G0564 Trochodendron aralioides HOM05D006966 ORTHO05D008111 9.4e-14 81.6 110 43.6
Peaxi162Scf00071g00710 Petunia axillaris HOM05D006966 ORTHO05D008111 1.2e-13 81.3 61 67.2
PGR031G1796 Punica granatum HOM05D006966 ORTHO05D008111 1.6e-13 80.9 68 67.6
BcaB04g20143 Brassica carinata HOM05D006966 ORTHO05D008111 2.1e-13 80.5 56 67.9
Lj5g0008249 Lotus japonicus HOM05D006966 ORTHO05D008111 2.1e-13 80.5 84 56.0
Sc16g0008300 Simmondsia chinensis HOM05D006966 ORTHO05D008111 2.7e-13 80.1 73 57.5
AT1G54740 Arabidopsis thaliana HOM05D006966 ORTHO05D008111 3.6e-13 79.7 55 67.3
Glyma.10G157600 Glycine max HOM05D006966 ORTHO05D008111 3.6e-13 79.7 71 62.0
Nn4g26120 Nelumbo nucifera HOM05D006966 ORTHO05D008111 3.6e-13 79.7 66 62.1
VMungo0720G1138 Vigna mungo HOM05D006966 ORTHO05D008111 3.6e-13 79.7 65 64.6
Sabra13G0027800 Salix brachista HOM05D006966 ORTHO05D008111 6.1e-13 79.0 69 62.3
Actinidia19807 Actinidia chinensis HOM05D001271 ORTHO05D008111 7.9e-13 78.6 88 52.3
Sc09g0003390 Simmondsia chinensis HOM05D006966 ORTHO05D008111 1.4e-12 77.8 185 36.8
DCAR_022251 Daucus carota HOM05D006966 ORTHO05D008111 3.0e-12 76.6 118 38.1
Gohir.A11G262300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.9e-12 76.3 121 41.3
Gorai.007G293600 Gossypium raimondii HOM05D006966 ORTHO05D008111 3.9e-12 76.3 122 41.8
Dinv11270 Davidia involucrata HOM05D006966 ORTHO05D017198 5.1e-12 75.9 61 59.0
Thhalv10023602m.g Eutrema salsugineum HOM05D006966 ORTHO05D008111 8.8e-12 75.1 195 34.9
Medtr1g082320 Medicago truncatula HOM05D006966 ORTHO05D008111 1.1e-11 74.7 67 55.2
Aqoxy5G00570 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 2.5e-11 73.6 146 36.3
Haze_04244 Corylus avellana HOM05D006966 ORTHO05D008111 2.5e-11 73.6 63 58.7
Glyma.20G231100 Glycine max HOM05D006966 ORTHO05D008111 5.7e-11 72.4 67 56.7
Lalb_Chr06g0167831 Lupinus albus HOM05D006966 ORTHO05D008111 7.4e-11 72.0 115 40.0
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 9.7e-11 71.6 90 50.0
PSO832G1078 Papaver somniferum HOM05D006966 ORTHO05D008111 2.2e-10 70.5 68 55.9
Ah.06g190190 Amaranthus hybridus HOM05D006966 ORTHO05D008111 6.3e-10 68.9 55 58.2
Cfa006536 Carpinus fangiana HOM05D006966 ORTHO05D008111 6.3e-10 68.9 67 53.7
CDE11G0954 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 6.3e-10 68.9 59 57.6
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 1.4e-09 67.8 113 39.8
PSO210G4305 Papaver somniferum HOM05D006966 ORTHO05D008111 1.8e-09 67.4 118 42.4
TPR.G2724 Trifolium pratense HOM05D006966 ORTHO05D008111 1.8e-09 67.4 66 54.5
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 3.1e-09 66.6 91 41.8
HPP92_011806 Vanilla planifolia HOM05D006966 ORTHO05D008111 3.1e-09 66.6 120 40.0
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 4.1e-09 66.2 60 53.3
EL10Ac4g09297 Beta vulgaris HOM05D036395 ORTHO05D008111 1.2e-08 64.7 54 53.7
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 1.5e-08 64.3 92 43.5
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 2.6e-08 63.5 60 51.7
Psat6g148600 Pisum sativum HOM05D006966 ORTHO05D008111 3.4e-08 63.2 75 45.3
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 4.5e-08 62.8 85 47.1
SEGI_39458 Sequoiadendron giganteum HOM05D004622 ORTHO05D005431 4.5e-08 62.8 135 33.3
CiPaw.08G167600 Carya illinoinensis HOM05D006966 ORTHO05D008111 5.9e-08 62.4 180 37.2
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 5.9e-08 62.4 97 44.3
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 5.9e-08 62.4 68 51.5
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 7.7e-08 62.0 59 50.8
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 7.7e-08 62.0 72 48.6
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 7.7e-08 62.0 98 42.9
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 1.0e-07 61.6 80 45.0
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.0e-07 61.6 101 40.6
Os02g0534000 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 1.3e-07 61.2 75 46.7
Zm00001eb242780 Zea mays HOM05D004622 ORTHO05D005431 1.3e-07 61.2 63 54.0
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 1.7e-07 60.8 68 50.0
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 1.7e-07 60.8 59 49.2
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 2.2e-07 60.5 63 52.4
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 2.2e-07 60.5 69 47.8
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 2.2e-07 60.5 91 42.9
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 2.2e-07 60.5 107 35.5
CiPaw.07G014000 Carya illinoinensis HOM05D006966 ORTHO05D008111 2.9e-07 60.1 84 47.6
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 2.9e-07 60.1 63 47.6
Aqoxy2G03182 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 3.8e-07 59.7 63 49.2
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 3.8e-07 59.7 99 38.4
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 5.0e-07 59.3 69 52.2
DCAR_003308 Daucus carota HOM05D006966 ORTHO05D008111 5.0e-07 59.3 109 36.7
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 5.0e-07 59.3 63 50.8
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 6.5e-07 58.9 101 38.6
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 6.5e-07 58.9 67 47.8
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 6.5e-07 58.9 105 39.0
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 6.5e-07 58.9 64 45.3
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 6.5e-07 58.9 59 50.8
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 6.5e-07 58.9 60 48.3
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 6.5e-07 58.9 60 48.3
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 8.5e-07 58.5 76 44.7
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 8.5e-07 58.5 91 41.8
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 8.5e-07 58.5 91 39.6
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 8.5e-07 58.5 61 47.5
Sopen00g012390 Solanum pennellii HOM05D006966 ORTHO05D008111 8.5e-07 58.5 75 50.7
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 8.5e-07 58.5 61 47.5
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 8.5e-07 58.5 61 47.5
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.1e-06 58.2 92 41.3
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 1.1e-06 58.2 92 41.3
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 1.1e-06 58.2 70 47.1
Aqoxy4G02752 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.4e-06 57.8 98 35.7
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 1.4e-06 57.8 59 50.8
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.4e-06 57.8 69 44.9
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 1.4e-06 57.8 92 39.1
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 1.4e-06 57.8 66 51.5
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 1.4e-06 57.8 59 49.2
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 1.4e-06 57.8 67 47.8
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 1.4e-06 57.8 64 45.3
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 1.4e-06 57.8 117 38.5
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 1.4e-06 57.8 55 52.7
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.9e-06 57.4 101 36.6
DCAR_030988 Daucus carota HOM05D022363 ORTHO05D017198 1.9e-06 57.4 54 48.1
Ah.04g159860 Amaranthus hybridus HOM05D006966 ORTHO05D008111 2.5e-06 57.0 55 47.3
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 2.5e-06 57.0 66 48.5
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 2.5e-06 57.0 60 51.7
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 2.5e-06 57.0 88 40.9
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 2.5e-06 57.0 65 47.7
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 3.2e-06 56.6 68 45.6
AUR62000853 Chenopodium quinoa HOM05D036395 ORTHO05D008111 3.2e-06 56.6 49 55.1
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 3.2e-06 56.6 92 39.1
Nitab4.5_0003163g0020 Nicotiana tabacum HOM05D000846 ORTHO05D008111 3.2e-06 56.6 80 43.8
SalBow3G2592 Salvia bowleyana HOM05D004622 ORTHO05D005431 3.2e-06 56.6 92 39.1
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 4.2e-06 56.2 67 47.8
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 5.5e-06 55.8 98 38.8
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 5.5e-06 55.8 62 43.5
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 5.5e-06 55.8 79 43.0
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 5.5e-06 55.8 58 48.3
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 5.5e-06 55.8 58 48.3
Ca_10083_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 7.2e-06 55.5 90 38.9
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 7.2e-06 55.5 60 45.0
SGA_v2.0_scaffold295G47519 Striga asiatica HOM05D004622 ORTHO05D005431 7.2e-06 55.5 63 47.6
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 9.4e-06 55.1 59 49.2
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 9.4e-06 55.1 149 30.9
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 9.4e-06 55.1 63 44.4


User provided reference genes

Program Settings