Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1737 Fragaria x ananassa HOM05D009383 ORTHO05D011656 5.7e-144 514.2 257 100.0
FvH4_4g22682 Fragaria vesca HOM05D000003 ORTHO05D011656 1.2e-72 277.3 247 65.2
RcHm_v2.0_Chr4g0417671 Rosa chinensis HOM05D000003 ORTHO05D000004 3.5e-53 212.6 279 40.9
FAN04G0880 Fragaria x ananassa HOM05D009383 ORTHO05D011656 1.1e-49 201.1 130 83.8
FvH4_5g30171 Fragaria vesca HOM05D000003 ORTHO05D000006 1.3e-36 157.5 243 39.1
FAN08G0751 Fragaria x ananassa HOM05D009383 ORTHO05D011656 3.0e-36 156.4 165 54.5
FvH4_4g18821 Fragaria vesca HOM05D000003 ORTHO05D000006 8.5e-31 138.3 209 37.3
RcHm_v2.0_Chr5g0016681 Rosa chinensis HOM05D000003 ORTHO05D000004 9.3e-30 134.8 276 30.8
FAN14G0150 Fragaria x ananassa HOM05D009383 ORTHO05D011656 3.6e-29 132.9 87 82.8
FAN12G1786 Fragaria x ananassa HOM05D009383 ORTHO05D011656 2.3e-28 130.2 231 36.8
RcHm_v2.0_Chr5g0072911 Rosa chinensis HOM05D000003 ORTHO05D011656 6.9e-25 118.6 210 33.3
RcHm_v2.0_Chr1g0346251 Rosa chinensis HOM05D000003 ORTHO05D000004 9.1e-25 118.2 249 30.9
FvH4_3g29411 Fragaria vesca HOM05D000003 ORTHO05D000006 7.7e-24 115.2 98 57.1
FAN13G1869 Fragaria x ananassa HOM05D009383 ORTHO05D011656 1.4e-22 110.9 99 52.5
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 1.8e-20 104.0 277 28.5
RcHm_v2.0_Chr4g0415961 Rosa chinensis HOM05D000003 ORTHO05D000167 2.6e-19 100.1 274 29.6
FvH4_6g12311 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-18 97.8 248 29.0
FvH4_4g03361 Fragaria vesca HOM05D000003 ORTHO05D000004 5.3e-17 92.4 86 55.8
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-16 91.3 282 24.8
CANSAT01G2780 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-16 90.1 249 28.5
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-16 90.1 285 27.4
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 7.7e-16 88.6 283 25.1
CANSAT21G0177 Cannabis sativa HOM05D000003 ORTHO05D000167 7.7e-16 88.6 268 26.1
CANSAT25G2465 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-15 87.8 281 26.3
CANSAT64G0681 Cannabis sativa HOM05D000003 ORTHO05D000167 3.8e-15 86.3 286 29.0
CANSAT11G0192 Cannabis sativa HOM05D000003 ORTHO05D000004 6.5e-15 85.5 287 25.1
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 6.5e-15 85.5 287 25.4
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 6.5e-15 85.5 287 25.1
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-14 84.7 282 25.5
CANSAT64G0950 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-14 84.7 282 27.3
CANSAT01G1342 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-14 83.2 273 24.2
CANSAT56G3299 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-14 83.2 291 27.5
CANSAT35G1274 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-14 82.4 266 25.6
CANSAT21G1403 Cannabis sativa HOM05D000003 ORTHO05D000004 7.2e-14 82.0 283 24.4
CANSAT80G2664 Cannabis sativa HOM05D000003 ORTHO05D000167 7.2e-14 82.0 263 26.6
RcHm_v2.0_Chr4g0400031 Rosa chinensis HOM05D000003 ORTHO05D000004 7.2e-14 82.0 60 56.7
CANSAT25G2489 Cannabis sativa HOM05D000003 ORTHO05D000167 9.4e-14 81.6 257 27.2
CANSAT11G1896 Cannabis sativa HOM05D000003 ORTHO05D000167 2.7e-13 80.1 282 26.2
CANSAT64G2500 Cannabis sativa HOM05D000003 ORTHO05D000167 2.7e-13 80.1 283 24.7
CANSAT56G2281 Cannabis sativa HOM05D000003 ORTHO05D000167 3.6e-13 79.7 283 24.0
TWI56G1451 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 3.6e-13 79.7 280 21.8
CANSAT64G0360 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-13 79.3 286 26.2
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 1.0e-12 78.2 276 24.3
CANSAT11G2042 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-12 77.8 281 23.5
CANSAT56G2172 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-12 77.8 270 24.4
FAN02G4345 Fragaria x ananassa HOM05D001408 ORTHO05D001312 1.8e-12 77.4 76 47.4
CANSAT11G2606 Cannabis sativa HOM05D000003 ORTHO05D000167 2.3e-12 77.0 276 25.4
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 2.3e-12 77.0 278 24.1
RcHm_v2.0_Chr3g0471531 Rosa chinensis HOM05D065238 ORTHO05D012679 3.0e-12 76.6 225 28.0
CANSAT56G1334 Cannabis sativa HOM05D000003 ORTHO05D000167 5.2e-12 75.9 281 26.7
CANSAT25G1903 Cannabis sativa HOM05D000003 ORTHO05D000167 6.7e-12 75.5 281 24.2
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 6.7e-12 75.5 280 23.6
CANSAT01G2533 Cannabis sativa HOM05D000003 ORTHO05D000167 8.8e-12 75.1 281 24.6
CANSAT37G0018 Cannabis sativa HOM05D000003 ORTHO05D000167 8.8e-12 75.1 293 24.2
FAN02G2669 Fragaria x ananassa HOM05D001408 ORTHO05D001312 8.8e-12 75.1 76 46.1
RcHm_v2.0_Chr7g0226691 Rosa chinensis HOM05D009383 ORTHO05D011656 8.8e-12 75.1 98 42.9
FvH4_2g17852 Fragaria vesca HOM05D009383 ORTHO05D011656 1.1e-11 74.7 138 33.3
CANSAT56G4021 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-11 74.3 280 25.0
CANSAT64G2653 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-11 74.3 281 25.6
CANSAT56G1552 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-11 73.9 282 23.4
CANSAT56G2910 Cannabis sativa HOM05D000003 ORTHO05D000167 3.3e-11 73.2 257 24.9
CANSAT54G3006 Cannabis sativa HOM05D000003 ORTHO05D000167 5.7e-11 72.4 256 25.4
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-10 71.2 284 24.3
CANSAT78G0786 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-10 71.2 291 25.1
CANSAT80G0189 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-10 71.2 283 25.1
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 1.7e-10 70.9 257 26.5
RcHm_v2.0_Chr3g0463661 Rosa chinensis HOM05D009383 ORTHO05D011656 1.7e-10 70.9 93 39.8
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-10 70.1 282 24.1
FvH4_3g37001 Fragaria vesca HOM05D000003 ORTHO05D000006 2.8e-10 70.1 248 26.2
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-10 69.7 258 25.6
Manes.10G073050 Manihot esculenta HOM05D000003 ORTHO05D000167 6.3e-10 68.9 264 23.1
CANSAT78G1758 Cannabis sativa HOM05D000003 ORTHO05D000004 8.2e-10 68.6 183 24.6
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 8.2e-10 68.6 257 24.9
Lj1g0027700 Lotus japonicus HOM05D000003 ORTHO05D025264 1.4e-09 67.8 258 24.8
Manes.15G185801 Manihot esculenta HOM05D000003 ORTHO05D000167 1.4e-09 67.8 252 24.6
CANSAT64G0189 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-09 67.4 288 22.6
CANSAT56G0879 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-09 67.0 131 29.0
CANSAT80G2787 Cannabis sativa HOM05D000003 ORTHO05D000167 2.4e-09 67.0 184 25.0
CANSAT56G0533 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-09 66.6 134 29.9
CANSAT80G1560 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-09 66.6 131 29.0
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 3.1e-09 66.6 252 24.2
CANSAT11G0632 Cannabis sativa HOM05D000003 ORTHO05D000004 5.3e-09 65.9 290 24.5
CANSAT21G2614 Cannabis sativa HOM05D000003 ORTHO05D000167 5.3e-09 65.9 132 31.1
FvH4_6g28114 Fragaria vesca HOM05D009383 ORTHO05D011656 5.3e-09 65.9 96 38.5
PSO528G0073 Papaver somniferum HOM05D003407 ORTHO05D001026 5.3e-09 65.9 279 25.8
Atru.chr8.67 Acer truncatum HOM05D000003 ORTHO05D000167 7.0e-09 65.5 218 26.1
CANSAT78G2353 Cannabis sativa HOM05D000003 ORTHO05D000004 9.1e-09 65.1 292 24.3
CANSAT21G2025 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-08 64.7 194 27.3
COL.COLO4_38392 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.2e-08 64.7 264 25.4
Manes.16G107751 Manihot esculenta HOM05D000003 ORTHO05D000004 1.2e-08 64.7 201 24.4
RcHm_v2.0_Chr7g0206951 Rosa chinensis HOM05D013659 ORTHO05D012679 1.2e-08 64.7 190 23.7
CANSAT25G1265 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-08 64.3 299 23.4
CANSAT54G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-08 64.3 278 24.1
ECA238G4137 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.6e-08 64.3 120 28.3
FAN09G4046 Fragaria x ananassa HOM05D000090 ORTHO05D000083 1.6e-08 64.3 61 50.8
FAN24G1880 Fragaria x ananassa HOM05D009383 ORTHO05D011656 3.5e-08 63.2 85 36.5
CANSAT78G1435 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-08 62.8 293 23.5
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 4.5e-08 62.8 255 22.7
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 4.5e-08 62.8 285 21.8
RcHm_v2.0_Chr2g0144601 Rosa chinensis HOM05D013659 ORTHO05D012679 5.9e-08 62.4 125 29.6
CANSAT21G0502 Cannabis sativa HOM05D000003 ORTHO05D000167 7.7e-08 62.0 235 25.5
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 7.7e-08 62.0 285 23.5
CANSAT78G0894 Cannabis sativa HOM05D000003 ORTHO05D000167 7.7e-08 62.0 281 23.8
FAN18G3219 Fragaria x ananassa HOM05D009383 ORTHO05D011656 7.7e-08 62.0 85 36.5
CANSAT80G0814 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-07 61.6 284 21.1
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 1.0e-07 61.6 133 27.1
Manes.12G101201 Manihot esculenta HOM05D000003 ORTHO05D000004 1.0e-07 61.6 127 28.3
TWI53G0186 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.0e-07 61.6 278 25.2
CANSAT21G2540 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-07 61.2 132 28.8
CANSAT78G2409 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-07 60.8 250 23.6
CANSAT01G1104 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-07 60.5 253 23.7
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-07 60.5 292 22.9
Os01g0930300 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000167 2.9e-07 60.1 298 24.8
PSO447G0022 Papaver somniferum HOM05D000003 ORTHO05D000004 2.9e-07 60.1 108 33.3
CANSAT78G2528 Cannabis sativa HOM05D000003 ORTHO05D000167 3.8e-07 59.7 271 23.6
RcHm_v2.0_Chr7g0217171 Rosa chinensis HOM05D000003 ORTHO05D000167 3.8e-07 59.7 205 24.4
CANSAT80G1540 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-07 59.3 132 31.1
FAN15G1070 Fragaria x ananassa HOM05D009383 ORTHO05D011656 6.5e-07 58.9 90 42.2
PSO339G4317 Papaver somniferum HOM05D007919 ORTHO05D006738 6.5e-07 58.9 291 23.4
CANSAT64G1066 Cannabis sativa HOM05D000003 ORTHO05D000167 8.5e-07 58.5 224 22.8
PSO017G2202 Papaver somniferum HOM05D003407 ORTHO05D001026 8.5e-07 58.5 151 28.5
CANSAT64G1009 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-06 58.2 264 27.7
FvH4_4g11881 Fragaria vesca HOM05D000003 ORTHO05D000006 1.1e-06 58.2 258 25.6
RcHm_v2.0_Chr5g0012401 Rosa chinensis HOM05D000003 ORTHO05D010713 1.5e-06 57.8 205 23.4
RcHm_v2.0_Chr7g0191391 Rosa chinensis HOM05D009383 ORTHO05D011656 1.5e-06 57.8 78 41.0
SGA_v2.0_scaffold130G34315 Striga asiatica HOM05D000003 ORTHO05D000004 1.5e-06 57.8 279 21.9
Aa31LG5G21780 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.9e-06 57.4 156 27.6
CANSAT56G0133 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-06 57.4 188 26.1
FvH4_2g10980 Fragaria vesca HOM05D046715 ORTHO05D046362 1.9e-06 57.4 52 55.8
QL04p012103 Quercus lobata HOM05D000003 ORTHO05D000167 1.9e-06 57.4 99 36.4
Atru.chr4.3089 Acer truncatum HOM05D000003 ORTHO05D000126 2.5e-06 57.0 150 28.7
Atru.chr5.2450 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-06 57.0 288 22.9
BcaB07g31656 Brassica carinata HOM05D000003 ORTHO05D000925 2.5e-06 57.0 289 21.8
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 2.5e-06 57.0 147 25.2
CSS0031955 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 2.5e-06 57.0 154 28.6
CANSAT21G1369 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-06 57.0 289 22.1
CANSAT25G0172 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-06 57.0 134 26.9
CANSAT25G0899 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-06 57.0 191 25.1
CANSAT64G0538 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-06 57.0 194 28.9
PSO170G2811 Papaver somniferum HOM05D000003 ORTHO05D001026 2.5e-06 57.0 113 35.4
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 2.5e-06 57.0 285 23.9
QL05p005727 Quercus lobata HOM05D000432 ORTHO05D000320 2.5e-06 57.0 85 38.8
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-06 56.6 262 23.7
Atru.chr3.2393 Acer truncatum HOM05D000003 ORTHO05D000022 3.2e-06 56.6 285 23.9
CANSAT56G3244 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-06 56.6 232 22.8
RcHm_v2.0_Chr3g0488511 Rosa chinensis HOM05D000003 ORTHO05D000167 3.2e-06 56.6 69 37.7
CANSAT56G1390 Cannabis sativa HOM05D000003 ORTHO05D000167 4.2e-06 56.2 242 22.3
FvH4_4g07171 Fragaria vesca HOM05D008833 ORTHO05D012679 4.2e-06 56.2 236 21.6
Aa31LG11G5340 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.5e-06 55.8 143 25.9
CANSAT56G0876 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-06 55.8 190 25.8
CANSAT78G1090 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-06 55.8 241 24.1
PSO339G0118 Papaver somniferum HOM05D003407 ORTHO05D001026 5.5e-06 55.8 159 28.3
RcHm_v2.0_Chr5g0038961 Rosa chinensis HOM05D008833 ORTHO05D000167 5.5e-06 55.8 99 35.4
PSO782G4810 Papaver somniferum HOM05D007919 ORTHO05D006738 7.2e-06 55.5 286 22.0
CANSAT11G2283 Cannabis sativa HOM05D000003 ORTHO05D000004 9.4e-06 55.1 207 27.1
CANSAT64G1764 Cannabis sativa HOM05D000003 ORTHO05D000167 9.4e-06 55.1 189 25.4
CANSAT80G0316 Cannabis sativa HOM05D000003 ORTHO05D000167 9.4e-06 55.1 223 22.4
FvH4_1g26332 Fragaria vesca HOM05D000003 ORTHO05D000004 9.4e-06 55.1 126 26.2
FvH4_3g30011 Fragaria vesca HOM05D008833 ORTHO05D010662 9.4e-06 55.1 181 23.8


User provided reference genes

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