Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.0e-54 216.5 109 100.0
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.3e-53 211.5 109 96.3
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 5.7e-53 210.7 109 96.3
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 5.7e-53 210.7 109 96.3
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.7e-52 209.1 109 95.4
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 6.3e-52 207.2 109 94.5
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 2.0e-45 185.7 109 81.7
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 1.7e-44 182.6 109 80.7
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 6.3e-44 180.6 109 78.9
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 1.8e-43 179.1 106 82.1
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 2.4e-43 178.7 106 81.1
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 5.3e-43 177.6 106 80.2
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 9.1e-43 176.8 106 80.2
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 1.2e-42 176.4 105 79.0
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.6e-42 176.0 109 76.1
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 2.0e-42 175.6 105 78.1
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 2.0e-42 175.6 109 78.9
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 78.1
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 2.6e-42 175.3 104 78.8
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 76.2
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 1.7e-41 172.6 105 76.2
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 77.1
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 78.1
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 76.2
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 5.0e-41 171.0 102 78.4
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 8.5e-41 170.2 103 76.7
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.5e-40 169.5 103 78.6
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.5e-40 169.5 103 78.6
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 2.5e-40 168.7 105 75.2
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 3.2e-40 168.3 105 75.2
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 5.5e-40 167.5 101 77.2
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 5.5e-40 167.5 104 75.0
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 7.2e-40 167.2 105 75.2
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 7.2e-40 167.2 105 75.2
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 7.2e-40 167.2 102 77.5
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 7.2e-40 167.2 102 77.5
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 9.4e-40 166.8 106 75.5
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 9.4e-40 166.8 102 77.5
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 1.6e-39 166.0 102 75.5
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 2.1e-39 165.6 107 73.8
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 2.7e-39 165.2 103 72.8
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 4.7e-39 164.5 103 74.8
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 6.1e-39 164.1 102 77.5
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 8.0e-39 163.7 105 74.3
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 1.4e-38 162.9 105 73.3
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.4e-38 162.9 107 72.9
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.8e-38 162.5 103 71.8
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 1.8e-38 162.5 103 72.8
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 1.8e-38 162.5 106 72.6
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.3e-38 162.2 103 71.8
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 73.3
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 73.3
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 3.0e-38 161.8 103 75.7
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 3.0e-38 161.8 101 74.3
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 4.0e-38 161.4 109 72.5
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 5.2e-38 161.0 105 74.3
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 8.8e-38 160.2 102 72.5
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 8.8e-38 160.2 102 72.5
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 8.8e-38 160.2 109 69.7
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 8.8e-38 160.2 100 74.0
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 1.2e-37 159.8 102 71.6
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 1.2e-37 159.8 102 71.6
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 2.0e-37 159.1 103 72.8
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 2.0e-37 159.1 102 74.5
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 2.6e-37 158.7 104 69.2
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.3e-37 158.3 103 69.9
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 72.4
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 72.4
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 4.4e-37 157.9 104 68.3
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 4.4e-37 157.9 103 72.8
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 4.4e-37 157.9 103 71.8
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 5.7e-37 157.5 102 70.6
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 5.7e-37 157.5 105 71.4
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 7.5e-37 157.1 105 72.4
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 7.5e-37 157.1 105 70.5
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 7.5e-37 157.1 105 72.4
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 9.7e-37 156.8 103 69.9
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 9.7e-37 156.8 102 69.6
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.3e-36 156.4 103 69.9
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 1.7e-36 156.0 102 69.6
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 2.2e-36 155.6 105 66.7
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 2.2e-36 155.6 105 71.4
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 2.2e-36 155.6 106 70.8
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 6.3e-36 154.1 104 67.3
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 6.3e-36 154.1 104 67.3
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 1.1e-35 153.3 103 71.8
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 5.3e-35 151.0 99 71.7
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 9.1e-35 150.2 105 69.5
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 1.2e-34 149.8 102 66.7
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 2.0e-34 149.1 105 70.5
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 2.7e-34 148.7 105 68.6
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 1.0e-33 146.7 105 63.8
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 2.2e-33 145.6 130 58.5
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 2.9e-33 145.2 102 64.7
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 5.0e-33 144.4 102 71.6
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 6.5e-33 144.1 102 71.6
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 6.5e-33 144.1 105 61.9
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 8.5e-33 143.7 106 66.0
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 3.2e-32 141.7 105 64.8
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 4.2e-32 141.4 107 64.5
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 9.4e-32 140.2 106 62.3
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 9.4e-32 140.2 101 64.4
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 1.2e-31 139.8 134 56.7
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 1.4e-30 136.3 93 69.9
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 2.3e-30 135.6 107 58.9
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 8.8e-30 133.7 90 68.9
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 2.6e-29 132.1 106 60.4
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 9.8e-29 130.2 107 61.7
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 5.4e-27 124.4 99 58.6
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 4.5e-26 121.3 96 57.3
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 3.8e-25 118.2 75 77.3
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 8.6e-25 117.1 74 77.0
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 1.1e-24 116.7 89 59.6
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 4.2e-24 114.8 78 69.2
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 5.5e-24 114.4 96 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 1.6e-23 112.8 90 56.7
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.6e-23 112.8 99 57.6
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 2.8e-23 112.1 75 73.3
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 3.6e-23 111.7 74 73.0
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 4.7e-23 111.3 89 60.7
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 5.7e-21 104.4 96 58.3
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 1.7e-20 102.8 83 63.9
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 3.7e-20 101.7 68 69.1
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 8.3e-20 100.5 105 52.4
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.8e-19 99.4 68 72.1
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.8e-19 99.4 68 72.1
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 3.1e-19 98.6 113 52.2
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 1.5e-16 89.7 76 57.9
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 5.8e-13 77.8 48 77.1
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.9e-11 72.8 80 53.8
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 2.7e-10 68.9 46 69.6
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 2.5e-08 62.4 86 37.2
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 3.3e-08 62.0 45 71.1
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 3.6e-07 58.5 42 59.5


User provided reference genes

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