Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 0.0e+00 1377.1 694 100.0
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.4e-168 597.4 303 96.4
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.9e-136 488.8 303 81.8
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 1.8e-128 464.2 238 97.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.3e-126 458.0 238 95.0
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.1e-116 424.1 342 68.1
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.1e-104 382.1 667 41.8
FAN14G4481 Fragaria x ananassa HOM05D004140 ORTHO05D203265 2.7e-79 300.8 155 94.8
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 5.9e-79 299.7 249 63.1
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 8.9e-75 285.8 247 62.8
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 9.2e-64 249.2 348 48.0
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.0e-54 217.6 248 52.8
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 7.3e-53 213.0 245 51.8
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.3e-53 213.0 245 51.8
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.3e-53 213.0 245 51.8
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-52 211.5 245 51.4
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 4.7e-52 210.3 245 50.6
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.1e-52 209.5 255 49.8
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 2.3e-51 208.0 246 49.2
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 2.3e-51 208.0 249 49.8
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 8.9e-51 206.1 246 48.8
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 5.8e-50 203.4 245 47.8
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 5.8e-50 203.4 245 48.2
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 7.5e-50 203.0 268 45.1
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.7e-49 201.8 249 46.6
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.7e-49 201.8 247 48.2
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.7e-49 201.8 247 48.2
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 2.9e-49 201.1 246 48.4
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 2.9e-49 201.1 246 48.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 2.9e-49 201.1 249 48.2
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.7e-49 200.7 246 47.2
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.7e-49 200.7 246 46.3
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 3.7e-49 200.7 249 46.2
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 4.9e-49 200.3 246 47.2
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 4.9e-49 200.3 246 47.2
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 4.9e-49 200.3 249 47.8
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 4.9e-49 200.3 246 46.7
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 6.4e-49 199.9 246 48.4
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 6.4e-49 199.9 244 46.7
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 8.3e-49 199.5 246 48.4
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 8.3e-49 199.5 246 46.7
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.9e-48 198.4 261 46.4
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.9e-48 198.4 246 48.4
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 2.4e-48 198.0 246 48.0
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 2.4e-48 198.0 250 45.6
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.4e-48 198.0 246 45.5
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 3.2e-48 197.6 258 45.3
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 4.1e-48 197.2 246 45.9
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 5.4e-48 196.8 261 46.0
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 5.4e-48 196.8 246 46.7
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.2e-47 195.7 246 46.3
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.6e-47 195.3 246 45.1
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.6e-47 195.3 277 43.0
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.6e-47 195.3 246 46.3
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.6e-47 195.3 266 44.7
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.7e-47 194.5 246 44.7
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 2.7e-47 194.5 246 45.1
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 4.6e-47 193.7 246 45.1
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 6.0e-47 193.4 245 45.3
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 6.0e-47 193.4 246 46.7
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 7.8e-47 193.0 246 46.3
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 7.8e-47 193.0 269 43.9
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 7.8e-47 193.0 246 45.9
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 7.8e-47 193.0 246 45.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.0e-46 192.6 244 46.3
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.0e-46 192.6 245 46.1
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.0e-46 192.6 246 45.5
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.0e-46 192.6 233 50.6
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.0e-46 192.6 246 45.5
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.3e-46 192.2 249 45.4
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 2.3e-46 191.4 241 44.4
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 2.3e-46 191.4 245 45.7
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 3.9e-46 190.7 245 46.1
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 3.9e-46 190.7 249 45.0
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 3.9e-46 190.7 245 46.1
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 3.9e-46 190.7 246 46.7
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 3.9e-46 190.7 265 43.4
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 5.1e-46 190.3 249 45.4
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 6.6e-46 189.9 247 46.2
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 8.6e-46 189.5 266 43.6
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 8.6e-46 189.5 243 45.7
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 8.6e-46 189.5 256 44.1
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.1e-45 189.1 246 45.1
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.5e-45 188.7 266 43.6
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.5e-45 188.7 249 44.6
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.5e-45 188.7 265 42.3
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.9e-45 188.3 248 46.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 2.5e-45 188.0 245 44.9
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 3.3e-45 187.6 262 45.4
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 3.3e-45 187.6 246 45.5
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 5.6e-45 186.8 239 44.8
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 7.3e-45 186.4 266 43.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.2e-44 185.7 271 41.0
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.2e-44 185.7 271 41.0
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.6e-44 185.3 246 45.5
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 2.1e-44 184.9 264 45.1
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.6e-44 184.1 267 41.6
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 4.7e-44 183.7 264 45.1
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 8.1e-44 183.0 248 44.0
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 8.1e-44 183.0 246 44.3
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 3.1e-43 181.0 265 42.6
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 5.2e-43 180.3 287 40.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.8e-43 179.9 246 45.1
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 8.9e-43 179.5 241 45.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 8.9e-43 179.5 233 44.6
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.2e-42 179.1 264 42.8
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.7e-41 175.3 262 43.1
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 2.2e-41 174.9 246 42.3
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 1.4e-40 172.2 347 38.6
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.1e-39 168.3 244 43.0
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.1e-39 168.3 276 40.6
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.1e-39 168.3 288 37.5
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.1e-37 162.5 246 40.7
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 3.6e-36 157.5 263 41.4
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 8.1e-36 156.4 181 49.2
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 8.1e-36 156.4 232 45.7
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.1e-35 156.0 197 43.7
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.4e-35 155.6 258 39.5
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 5.3e-35 153.7 257 38.5
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.5e-34 152.1 256 41.8
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.3e-33 149.1 190 43.2
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 8.4e-33 146.4 261 35.6
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.6e-31 142.1 243 39.1
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 2.1e-31 141.7 158 46.8
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.6e-30 136.7 167 46.1
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.1e-29 136.0 166 45.8
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.5e-29 135.6 188 43.6
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.9e-29 135.2 166 45.2
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.4e-26 124.4 247 34.4
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.2e-25 121.7 298 32.2
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 4.9e-25 120.6 247 33.6
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.3e-22 112.5 242 35.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.5e-21 108.2 258 33.3
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 5.8e-18 97.1 127 44.9
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 5.8e-18 97.1 78 61.5
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.3e-14 85.9 127 40.9
FAN02G3615 Fragaria x ananassa HOM05D004140 ORTHO05D207337 1.3e-14 85.9 49 79.6
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.3e-12 79.3 108 43.5
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.4e-11 75.9 173 34.7
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.9e-06 57.8 70 41.4
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 6.7e-06 57.0 83 41.0


User provided reference genes

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