Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.0e-208 728.8 359 100.0
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 2.3e-199 698.7 363 95.3
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.4e-195 684.5 364 94.0
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 1.6e-192 676.0 361 92.5
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.4e-188 662.1 362 91.7
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.8e-167 592.8 363 80.4
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.1e-166 590.1 363 79.3
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 9.0e-164 580.5 367 78.7
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.7e-162 576.2 364 78.6
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 4.9e-162 574.7 367 77.7
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 6.4e-162 574.3 365 78.4
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 3.2e-161 572.0 363 78.2
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 4.2e-161 571.6 370 76.8
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.6e-160 569.7 357 77.0
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 1.6e-160 569.7 372 74.7
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.7e-160 568.9 365 77.8
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 3.5e-160 568.5 363 77.7
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 3.5e-160 568.5 368 76.4
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 5.1e-159 564.7 366 76.0
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 8.7e-159 563.9 370 75.4
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 5.6e-158 561.2 310 85.2
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 7.4e-158 560.8 364 75.3
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.3e-157 560.1 308 85.1
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.1e-157 559.3 363 75.8
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.8e-157 558.9 370 74.9
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.8e-157 558.9 365 75.9
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.8e-156 556.2 363 75.5
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 4.0e-156 555.1 366 75.7
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 5.3e-156 554.7 378 73.8
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 6.9e-156 554.3 350 77.1
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 9.0e-156 553.9 368 73.1
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.6e-155 552.4 358 76.3
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 1.0e-154 550.4 355 77.2
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.3e-154 550.1 296 85.5
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.3e-154 550.1 365 74.8
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 2.2e-154 549.3 363 74.1
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 4.9e-154 548.1 367 74.4
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 6.5e-154 547.7 304 83.2
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.4e-153 546.6 365 72.3
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.4e-153 546.6 371 71.7
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.9e-153 546.2 324 80.2
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 1.9e-153 546.2 373 72.4
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 3.2e-153 545.4 370 72.7
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 4.2e-153 545.0 369 73.2
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 7.1e-153 544.3 366 73.0
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.1e-153 544.3 352 75.9
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 9.3e-153 543.9 366 72.7
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 2.1e-152 542.7 361 72.9
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 2.1e-152 542.7 359 74.4
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.7e-152 542.3 368 73.6
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 3.5e-152 542.0 367 73.8
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 4.6e-152 541.6 342 75.4
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 6.0e-152 541.2 342 75.4
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.0e-151 540.4 335 78.2
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.0e-151 540.4 363 73.3
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.3e-151 540.0 363 73.3
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.3e-151 540.0 377 70.8
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.8e-151 539.7 372 72.0
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 3.0e-151 538.9 361 71.2
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 6.7e-151 537.7 360 72.5
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 1.5e-150 536.6 365 71.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.5e-150 536.6 364 72.5
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.5e-150 536.6 384 69.8
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.9e-150 536.2 360 74.4
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 2.5e-150 535.8 368 70.7
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.3e-150 535.4 392 70.2
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 5.7e-150 534.6 365 71.5
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 7.4e-150 534.3 361 73.4
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 9.7e-150 533.9 351 75.8
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 9.7e-150 533.9 362 70.2
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.3e-149 533.5 363 72.2
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.3e-149 533.5 361 69.8
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.3e-149 533.5 480 59.6
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 1.3e-149 533.5 365 71.5
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.6e-149 533.1 367 72.2
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.8e-149 532.3 362 71.5
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 4.8e-149 531.6 363 72.7
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 3.1e-148 528.9 364 70.9
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 9.0e-148 527.3 364 72.0
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.2e-147 526.9 349 73.9
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.5e-147 526.6 318 77.4
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 3.4e-147 525.4 365 71.8
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 4.5e-147 525.0 364 71.4
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.5e-147 525.0 365 72.1
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.3e-146 523.5 364 71.2
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 2.2e-146 522.7 359 70.2
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 3.8e-146 521.9 367 71.4
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 3.8e-146 521.9 365 71.2
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 6.5e-146 521.2 369 71.0
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 6.5e-146 521.2 368 70.9
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 6.5e-146 521.2 363 71.1
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.1e-145 520.4 369 71.3
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.4e-145 520.0 386 68.1
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-145 519.6 366 70.8
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-145 519.6 361 71.2
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 3.2e-145 518.8 367 70.8
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 3.2e-145 518.8 367 70.8
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.2e-144 516.9 362 70.7
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 2.1e-144 516.2 364 69.2
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 4.3e-142 508.4 365 69.9
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.8e-140 503.1 355 70.4
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 6.9e-140 501.1 363 70.8
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 2.2e-138 496.1 357 68.3
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.9e-137 493.0 328 75.9
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 2.7e-136 489.2 349 68.8
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.0e-135 487.3 314 75.5
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 8.8e-135 484.2 291 74.9
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 4.4e-134 481.9 386 63.7
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 4.2e-129 465.3 277 79.4
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.0e-127 460.7 321 70.1
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 4.8e-125 451.8 337 68.8
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 8.2e-125 451.1 313 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 3.7e-117 425.6 286 68.2
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 4.8e-117 425.2 282 69.5
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 7.0e-116 421.4 311 66.6
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 7.7e-115 417.9 361 62.6
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 5.0e-114 415.2 282 72.7
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 2.5e-113 412.9 332 65.7
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.5e-110 403.7 285 68.1
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.0e-107 393.3 244 75.8
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 2.0e-107 393.3 311 61.7
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 2.3e-106 389.8 255 76.9
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.5e-97 360.5 295 59.7
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 8.9e-95 351.3 246 65.9
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 4.9e-93 345.5 294 56.8
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 8.3e-93 344.7 258 67.8
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.1e-89 334.3 332 57.2
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 1.4e-87 327.4 288 58.0
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.3e-79 300.1 168 84.5
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 6.6e-74 282.0 158 82.9
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 7.8e-67 258.5 229 57.2
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 2.8e-64 250.0 127 92.1
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 4.4e-62 242.7 131 85.5
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.2e-52 209.5 307 43.3
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 6.2e-48 195.7 147 65.3
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.5e-46 191.0 100 88.0
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 5.1e-42 176.0 147 61.2
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 6.2e-40 169.1 147 60.5
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.4e-39 167.2 145 56.6
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.5e-33 147.9 147 52.4
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 9.7e-33 145.2 108 62.0
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.6e-30 137.1 72 88.9
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.6e-22 110.5 100 59.0
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.4e-20 104.8 57 80.7
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.2e-19 101.7 64 75.0
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 2.8e-16 90.5 51 76.5
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 6.3e-16 89.4 51 76.5
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.8e-15 87.8 44 86.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 2.0e-14 84.3 39 97.4
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 2.9e-13 80.5 67 56.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 2.9e-13 80.5 67 56.7
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.2e-11 75.1 35 88.6
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 3.0e-10 70.5 58 60.3
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.5e-09 68.2 40 82.5
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 3.5e-06 57.0 96 44.8


User provided reference genes

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