Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.2e-297 1025.8 519 100.0
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 1.2e-257 892.9 529 86.4
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.2e-254 882.9 529 85.3
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 6.3e-251 870.5 534 83.1
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.5e-247 858.6 507 86.4
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 8.3e-227 790.4 542 74.2
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 3.5e-225 785.0 537 74.5
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 1.2e-217 760.0 529 72.2
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 2.3e-208 729.2 544 68.0
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 8.1e-206 720.7 542 68.1
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 3.1e-205 718.8 530 68.1
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 5.4e-202 708.0 535 68.2
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 5.4e-202 708.0 535 68.2
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 1.6e-201 706.4 525 69.9
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 6.0e-201 704.5 553 65.8
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 3.9e-200 701.8 529 66.9
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.5e-199 699.9 529 67.7
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 7.3e-199 697.6 523 67.3
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 1.2e-198 696.8 521 67.0
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.6e-198 696.4 523 66.7
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 2.8e-198 695.7 477 71.1
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.4e-197 693.3 521 68.5
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 3.1e-197 692.2 513 68.8
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 2.6e-196 689.1 529 67.1
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 3.4e-196 688.7 529 67.1
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 4.4e-196 688.3 532 65.4
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.4e-196 688.3 499 67.9
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 7.6e-196 687.6 517 65.2
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 9.9e-196 687.2 536 65.5
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 4.9e-195 684.9 513 68.4
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 2.4e-194 682.6 518 66.4
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 2.4e-194 682.6 518 65.8
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 3.2e-194 682.2 503 67.8
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 2.7e-193 679.1 517 67.5
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 3.5e-193 678.7 476 69.5
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 6.0e-193 677.9 458 71.4
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 7.8e-193 677.6 529 64.5
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.7e-192 676.4 536 66.0
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 6.6e-192 674.5 529 64.8
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 8.6e-192 674.1 476 67.9
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.1e-191 673.7 476 67.9
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 1.5e-191 673.3 517 64.2
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.5e-191 673.3 517 64.6
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 1.5e-191 673.3 530 65.7
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 1.9e-191 672.9 517 64.4
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 4.3e-191 671.8 517 64.4
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 5.6e-191 671.4 531 64.0
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 7.3e-191 671.0 513 67.4
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 1.2e-190 670.2 517 64.0
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 1.2e-190 670.2 532 64.7
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.6e-190 669.8 517 64.8
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 1.6e-190 669.8 536 62.9
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 2.1e-190 669.5 517 64.4
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 2.8e-190 669.1 520 65.0
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 3.6e-190 668.7 516 65.3
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 8.1e-190 667.5 561 61.5
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 8.9e-189 664.1 519 64.0
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 2.6e-188 662.5 476 66.6
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 1.3e-187 660.2 527 63.8
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.1e-186 657.1 520 63.1
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 7.1e-186 654.4 500 65.8
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.6e-185 653.3 516 63.4
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 3.5e-185 652.1 331 97.9
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 1.3e-184 650.2 506 63.8
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 3.0e-184 649.0 546 59.9
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 6.6e-184 647.9 482 66.0
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 7.3e-183 644.4 472 66.5
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 1.3e-182 643.7 527 63.4
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 4.8e-182 641.7 469 66.5
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 6.9e-181 637.9 484 64.0
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 2.0e-180 636.3 499 62.3
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.2e-179 632.9 510 62.4
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 3.2e-178 629.0 502 62.7
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 2.1e-177 626.3 526 61.0
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 7.9e-177 624.4 517 60.3
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 7.9e-177 624.4 524 58.8
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 1.9e-170 603.2 538 58.6
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 4.2e-170 602.1 473 61.9
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 1.3e-168 597.0 418 70.6
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 3.0e-168 595.9 493 63.5
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 5.3e-165 585.1 464 62.9
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 1.9e-162 576.6 440 62.7
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 2.5e-162 576.2 420 67.4
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 5.5e-162 575.1 476 60.5
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 7.4e-159 564.7 505 55.8
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 5.3e-157 558.5 512 56.2
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 2.2e-155 553.1 506 54.3
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.2e-148 530.8 497 56.1
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 1.5e-143 513.8 529 55.2
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 3.9e-136 489.2 331 74.3
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 2.4e-133 479.9 475 48.8
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 2.0e-132 476.9 472 47.9
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 7.2e-130 468.4 313 73.8
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 1.6e-129 467.2 331 70.1
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.2e-124 451.1 387 59.4
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 1.2e-124 451.1 463 47.5
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 3.7e-118 429.5 358 62.6
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 2.7e-113 413.3 289 73.0
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 2.1e-105 387.1 330 57.3
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 2.2e-102 377.1 420 44.8
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 4.6e-100 369.4 304 64.5
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 2.1e-97 360.5 389 45.2
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 6.8e-96 355.5 386 50.8
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 9.2e-85 318.5 250 61.2
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 1.1e-80 305.1 522 39.1
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 6.4e-78 295.8 240 62.5
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 3.6e-73 280.0 281 52.3
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 2.6e-71 273.9 172 81.4
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 6.2e-65 252.7 246 55.7
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 6.2e-65 252.7 512 32.4
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 5.7e-42 176.4 108 71.3
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 4.5e-31 140.2 483 27.5
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 2.9e-30 137.5 109 67.9
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 1.0e-27 129.0 94 67.0
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 1.0e-22 112.5 110 56.4
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.4e-21 108.6 385 26.5
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 4.2e-21 107.1 397 26.7
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 6.1e-20 103.2 171 33.9
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.2e-19 100.1 81 61.7
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.1e-16 90.5 85 55.3
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 7.0e-16 89.7 91 51.6
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 2.5e-13 81.3 53 64.2
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.2e-12 79.0 80 55.0
RcHm_v2.0_Chr3g0482901 Rosa chinensis HOM05D005888 ORTHO05D007791 4.0e-11 73.9 42 88.1
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 5.2e-11 73.6 38 78.9
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 1.3e-09 68.9 79 53.2
MCO09G155 Micromonas commoda HOM05D005216 ORTHO05D006453 1.6e-07 62.0 384 25.0
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.0e-06 59.3 85 40.0
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 5.0e-06 57.0 36 63.9


User provided reference genes

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