Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1535 Fragaria x ananassa HOM05D014348 ORTHO05D020628 6.0e-65 250.8 131 100.0
FAN27G2356 Fragaria x ananassa HOM05D014348 ORTHO05D020628 1.9e-34 149.4 88 87.5
FAN11G0380 Fragaria x ananassa HOM05D014348 ORTHO05D020628 2.4e-34 149.1 94 80.9
FAN12G1107 Fragaria x ananassa HOM05D014348 ORTHO05D020628 1.9e-31 139.4 95 78.9
FAN26G2466 Fragaria x ananassa HOM05D014348 ORTHO05D020628 4.5e-28 128.3 85 78.8
FvH4_1g29883 Fragaria vesca HOM05D014348 ORTHO05D020628 5.8e-28 127.9 125 58.4
FvH4_3g32411 Fragaria vesca HOM05D014348 ORTHO05D020628 5.8e-28 127.9 125 58.4
FAN18G3030 Fragaria x ananassa HOM05D001591 ORTHO05D001455 1.6e-17 93.2 55 87.3
FvH4_5g14440 Fragaria vesca HOM05D001591 ORTHO05D001455 4.6e-17 91.7 55 85.5
RcHm_v2.0_Chr7g0182221 Rosa chinensis HOM05D001591 ORTHO05D001455 8.7e-16 87.4 55 80.0
CiPaw.11G048300 Carya illinoinensis HOM05D001591 ORTHO05D001455 1.0e-11 73.9 55 70.9
FAN13G0343 Fragaria x ananassa HOM05D001591 ORTHO05D001455 1.0e-11 73.9 48 81.2
PGR102G0849 Punica granatum HOM05D001591 ORTHO05D001455 2.9e-11 72.4 61 63.9
FAN14G5002 Fragaria x ananassa HOM05D001215 ORTHO05D001387 3.8e-11 72.0 47 78.7
Prupe.5G199200 Prunus persica HOM05D001591 ORTHO05D001455 6.5e-11 71.2 50 74.0
Haze_11942 Corylus avellana HOM05D001591 ORTHO05D001455 1.1e-10 70.5 67 59.7
PSO063G7668 Papaver somniferum HOM05D001591 ORTHO05D001455 1.1e-10 70.5 67 59.7
PSO081G0043 Papaver somniferum HOM05D001591 ORTHO05D001455 1.1e-10 70.5 67 59.7
PSO081G0051 Papaver somniferum HOM05D001591 ORTHO05D001455 1.1e-10 70.5 67 59.7
Cfa019281 Carpinus fangiana HOM05D001591 ORTHO05D001455 1.4e-10 70.1 55 69.1
GSVIVG01007953001 Vitis vinifera HOM05D001591 ORTHO05D001455 1.4e-10 70.1 63 63.5
Aa31LG2G7190 Aethionema arabicum HOM05D001591 ORTHO05D001455 1.9e-10 69.7 65 56.9
AL5G13070 Arabidopsis lyrata HOM05D001591 ORTHO05D001455 1.9e-10 69.7 59 61.0
AT2G03350 Arabidopsis thaliana HOM05D001591 ORTHO05D001455 1.9e-10 69.7 59 61.0
Carub.0005s0233 Capsella rubella HOM05D001591 ORTHO05D001455 1.9e-10 69.7 59 61.0
CARHR145700 Cardamine hirsuta HOM05D001591 ORTHO05D001455 1.9e-10 69.7 59 61.0
Glyma.02G112900 Glycine max HOM05D001591 ORTHO05D001455 1.9e-10 69.7 56 64.3
CANSAT80G0044 Cannabis sativa HOM05D001591 ORTHO05D001455 2.5e-10 69.3 63 61.9
Manes.01G031100 Manihot esculenta HOM05D001591 ORTHO05D001455 2.5e-10 69.3 59 59.3
PSO063G0932 Papaver somniferum HOM05D001591 ORTHO05D001455 4.2e-10 68.6 54 64.8
QL10p018042 Quercus lobata HOM05D001591 ORTHO05D001455 4.2e-10 68.6 55 67.3
Solyc05g012680.3 Solanum lycopersicum HOM05D001591 ORTHO05D001455 4.2e-10 68.6 67 56.7
Sopen05g007510 Solanum pennellii HOM05D001591 ORTHO05D001455 4.2e-10 68.6 67 56.7
BcaB07g30302 Brassica carinata HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
BcaC03g17212 Brassica carinata HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
A02p33420 Brassica napus HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
C02p51410 Brassica napus HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
BolC2t11229H Brassica oleracea HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
BraA02t08364Z Brassica rapa HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
CAN.G1340.18 Capsicum annuum HOM05D001591 ORTHO05D001455 5.5e-10 68.2 65 55.4
CiPaw.06G089500 Carya illinoinensis HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 57.6
Thhalv10005001m.g Eutrema salsugineum HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
Potri.008G092500 Populus trichocarpa HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
Sabra08G0069300 Salix brachista HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
Sp2g14280 Schrenkiella parvula HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 59.3
Hund25199 Selenicereus undatus HOM05D001591 ORTHO05D001455 5.5e-10 68.2 76 52.6
PGSC0003DMG400028332 Solanum tuberosum HOM05D001591 ORTHO05D001455 5.5e-10 68.2 67 56.7
Thecc.02G337200 Theobroma cacao HOM05D001591 ORTHO05D001455 5.5e-10 68.2 59 61.0
arahy.Tifrunner.gnm1.ann1.C3L8SK Arachis hypogaea HOM05D001591 ORTHO05D001455 7.2e-10 67.8 59 61.0
A06p43180 Brassica napus HOM05D001591 ORTHO05D001455 7.2e-10 67.8 59 57.6
C07p33820 Brassica napus HOM05D001591 ORTHO05D001455 7.2e-10 67.8 59 57.6
BraA06t27206Z Brassica rapa HOM05D001591 ORTHO05D001455 7.2e-10 67.8 59 57.6
Cpa.g.sc13.305 Carica papaya HOM05D001591 ORTHO05D001455 7.2e-10 67.8 65 58.5
Cfa008915 Carpinus fangiana HOM05D001591 ORTHO05D001455 7.2e-10 67.8 67 56.7
CsaV3_5G033120 Cucumis sativus L. HOM05D001591 ORTHO05D001455 7.2e-10 67.8 59 61.0
Dinv38756 Davidia involucrata HOM05D001591 ORTHO05D001455 7.2e-10 67.8 59 61.0
MD16G1065800 Malus domestica HOM05D001591 ORTHO05D001455 7.2e-10 67.8 54 64.8
Manes.14G082400 Manihot esculenta HOM05D001591 ORTHO05D001455 7.2e-10 67.8 50 68.0
Nitab4.5_0000334g0160 Nicotiana tabacum HOM05D001591 ORTHO05D001455 7.2e-10 67.8 67 56.7
QL03p070046 Quercus lobata HOM05D001591 ORTHO05D001455 7.2e-10 67.8 59 59.3
QL10p017998 Quercus lobata HOM05D001591 ORTHO05D001455 7.2e-10 67.8 63 61.9
arahy.Tifrunner.gnm1.ann1.X6YF13 Arachis hypogaea HOM05D001591 ORTHO05D001455 9.3e-10 67.4 59 59.3
BcaC06g34003 Brassica carinata HOM05D001591 ORTHO05D001455 9.3e-10 67.4 59 57.6
BolC7t43896H Brassica oleracea HOM05D001591 ORTHO05D001455 9.3e-10 67.4 59 57.6
Ciclev10032888m.g Citrus clementina HOM05D001591 ORTHO05D001455 9.3e-10 67.4 54 61.1
Glyma.01G054400 Glycine max HOM05D001591 ORTHO05D001455 9.3e-10 67.4 56 62.5
CiPaw.05G128500 Carya illinoinensis HOM05D001591 ORTHO05D001455 1.2e-09 67.0 60 56.7
Gohir.D13G079200 Gossypium hirsutum HOM05D001591 ORTHO05D001455 1.2e-09 67.0 67 56.7
Phvul.002G090100 Phaseolus vulgaris HOM05D001591 ORTHO05D001455 1.2e-09 67.0 69 56.5
THA.LOC104805182 Tarenaya hassleriana HOM05D001591 ORTHO05D001455 1.2e-09 67.0 59 59.3
TAR374G1623 Trochodendron aralioides HOM05D001591 ORTHO05D001455 1.2e-09 67.0 67 56.7
Aqoxy3G03534 Aquilegia oxysepala HOM05D001591 ORTHO05D001455 1.6e-09 66.6 54 64.8
MSTRG.22992 Avicennia marina HOM05D001591 ORTHO05D001455 1.6e-09 66.6 59 57.6
AUR62008473 Chenopodium quinoa HOM05D001591 ORTHO05D001455 1.6e-09 66.6 55 61.8
AUR62021619 Chenopodium quinoa HOM05D001591 ORTHO05D001455 1.6e-09 66.6 55 61.8
Duzib084G0002 Durio zibethinus HOM05D001591 ORTHO05D001455 1.6e-09 66.6 50 68.0
Duzib251G0372 Durio zibethinus HOM05D001591 ORTHO05D001455 1.6e-09 66.6 59 59.3
Migut.L01228 Erythranthe guttata HOM05D001591 ORTHO05D001455 1.6e-09 66.6 67 53.7
Eucgr.B03185 Eucalyptus grandis HOM05D001591 ORTHO05D001455 1.6e-09 66.6 65 53.8
FAN11G0119 Fragaria x ananassa HOM05D014348 ORTHO05D207034 1.6e-09 66.6 100 43.0
MD06G1198400 Malus domestica HOM05D001591 ORTHO05D001455 1.6e-09 66.6 50 70.0
Prupe.1G281300 Prunus persica HOM05D001591 ORTHO05D001455 1.6e-09 66.6 54 63.0
Sabra10G0123600 Salix brachista HOM05D001591 ORTHO05D001455 1.6e-09 66.6 59 59.3
Thecc.03G095200 Theobroma cacao HOM05D001591 ORTHO05D001455 1.6e-09 66.6 50 68.0
CSS0048651 Camellia sinensis var. sinensis HOM05D001591 ORTHO05D001455 2.1e-09 66.2 65 55.4
Migut.I00224 Erythranthe guttata HOM05D001591 ORTHO05D001455 2.1e-09 66.2 67 55.2
FAN09G4448 Fragaria x ananassa HOM05D014348 ORTHO05D205243 2.1e-09 66.2 38 78.9
Potri.010G162400 Populus trichocarpa HOM05D001591 ORTHO05D001455 2.1e-09 66.2 59 59.3
SGA_v2.0_scaffold313G48317 Striga asiatica HOM05D001591 ORTHO05D001455 2.1e-09 66.2 70 54.3
THA.LOC104824068 Tarenaya hassleriana HOM05D001591 ORTHO05D001455 2.1e-09 66.2 54 61.1
Lj2g0004417 Lotus japonicus HOM05D001591 ORTHO05D001455 2.7e-09 65.9 61 55.7
Lalb_Chr10g0098561 Lupinus albus HOM05D001591 ORTHO05D001455 2.7e-09 65.9 69 52.2
VMungo1215G0558 Vigna mungo HOM05D001591 ORTHO05D001455 2.7e-09 65.9 56 58.9
ClCG05G023900 Citrullus lanatus HOM05D001591 ORTHO05D001455 3.5e-09 65.5 59 59.3
FAN07G2700 Fragaria x ananassa HOM05D001591 ORTHO05D001455 3.5e-09 65.5 54 61.1
Oeu055091.1 Olea europaea HOM05D001591 ORTHO05D001455 3.5e-09 65.5 54 59.3
RcHm_v2.0_Chr4g0438961 Rosa chinensis HOM05D001591 ORTHO05D001455 3.5e-09 65.5 54 61.1
COL.COLO4_27945 Corchorus olitorius HOM05D001591 ORTHO05D001455 4.6e-09 65.1 59 57.6
DCAR_030982 Daucus carota HOM05D001591 ORTHO05D001455 4.6e-09 65.1 59 57.6
Gohir.A03G068200 Gossypium hirsutum HOM05D001591 ORTHO05D001455 4.6e-09 65.1 61 55.7
Gohir.A13G079500 Gossypium hirsutum HOM05D001591 ORTHO05D001455 4.6e-09 65.1 54 61.1
Gorai.013G090600 Gossypium raimondii HOM05D001591 ORTHO05D001455 4.6e-09 65.1 54 61.1
HanXRQChr15g0481681 Helianthus annuus HOM05D001591 ORTHO05D001455 4.6e-09 65.1 59 59.3
TWI79G0905 Tripterygium wilfordii HOM05D001591 ORTHO05D001455 4.6e-09 65.1 59 55.9
CANSAT35G0141 Cannabis sativa HOM05D001591 ORTHO05D001455 6.1e-09 64.7 67 52.2
Dinv34107 Davidia involucrata HOM05D001591 ORTHO05D001455 6.1e-09 64.7 67 55.2
FAN12G2123 Fragaria x ananassa HOM05D001215 ORTHO05D001387 6.1e-09 64.7 35 88.6
Lsat_1_v5_gn_5_21220 Lactuca sativa HOM05D001591 ORTHO05D001455 6.1e-09 64.7 54 61.1
Nitab4.5_0001211g0110 Nicotiana tabacum HOM05D001591 ORTHO05D001455 6.1e-09 64.7 54 61.1
Atru.chr11.1696 Acer truncatum HOM05D001591 ORTHO05D001455 7.9e-09 64.3 59 54.2
Actinidia04860 Actinidia chinensis HOM05D001591 ORTHO05D001455 7.9e-09 64.3 67 53.7
EL10Ac5g11073 Beta vulgaris HOM05D001591 ORTHO05D001455 7.9e-09 64.3 54 59.3
Cc11_g12420 Coffea canephora HOM05D001591 ORTHO05D001455 7.9e-09 64.3 59 57.6
FvH4_4g30580 Fragaria vesca HOM05D001591 ORTHO05D001455 7.9e-09 64.3 54 59.3
FAN12G3940 Fragaria x ananassa HOM05D001591 ORTHO05D001455 7.9e-09 64.3 54 59.3
Nitab4.5_0002756g0010 Nicotiana tabacum HOM05D001591 ORTHO05D001455 7.9e-09 64.3 54 59.3
Psat2g127320 Pisum sativum HOM05D001591 ORTHO05D001455 7.9e-09 64.3 56 57.1
AUR62005868 Chenopodium quinoa HOM05D001591 ORTHO05D001455 1.0e-08 63.9 69 53.6
AUR62032860 Chenopodium quinoa HOM05D001591 ORTHO05D001455 1.0e-08 63.9 69 53.6
Eucgr.K02494 Eucalyptus grandis HOM05D001591 ORTHO05D001455 1.0e-08 63.9 63 58.7
Lalb_Chr17g0340941 Lupinus albus HOM05D001591 ORTHO05D001455 1.0e-08 63.9 76 47.4
Duzib248G1685 Durio zibethinus HOM05D001591 ORTHO05D001455 1.3e-08 63.5 54 59.3
FAN17G2238 Fragaria x ananassa HOM05D001591 ORTHO05D001455 1.3e-08 63.5 54 59.3
FAN18G0750 Fragaria x ananassa HOM05D001215 ORTHO05D001387 1.3e-08 63.5 44 75.0
Medtr5g043190 Medicago truncatula HOM05D001591 ORTHO05D001455 1.3e-08 63.5 56 57.1
Peaxi162Scf00364g00125 Petunia axillaris HOM05D001591 ORTHO05D001455 1.8e-08 63.2 67 52.2
PGSC0003DMG402024557 Solanum tuberosum HOM05D001591 ORTHO05D001455 1.8e-08 63.2 54 57.4
Oeu052464.1 Olea europaea HOM05D001591 ORTHO05D001455 2.3e-08 62.8 54 59.3
ECA246G3364 Erigeron canadensis HOM05D001591 ORTHO05D009891 3.0e-08 62.4 50 64.0
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.9e-08 62.0 67 53.7
Cc04_g14900 Coffea canephora HOM05D001591 ORTHO05D001455 3.9e-08 62.0 59 55.9
Solyc03g115640.3 Solanum lycopersicum HOM05D001591 ORTHO05D001455 3.9e-08 62.0 54 55.6
Sopen03g034630 Solanum pennellii HOM05D001591 ORTHO05D001455 3.9e-08 62.0 54 55.6
Ah.03g134580 Amaranthus hybridus HOM05D001591 ORTHO05D001455 5.1e-08 61.6 69 49.3
Lsat_1_v5_gn_3_51661 Lactuca sativa HOM05D001591 ORTHO05D001455 5.1e-08 61.6 56 57.1
Actinidia31955 Actinidia chinensis HOM05D001591 ORTHO05D001455 6.7e-08 61.2 59 54.2
ATR0730G128 Amborella trichopoda HOM05D001591 ORTHO05D001455 6.7e-08 61.2 50 60.0
Ca_04897_v3 Cicer arietinum L. HOM05D001591 ORTHO05D001455 6.7e-08 61.2 54 55.6
EL10Ac6g13284 Beta vulgaris HOM05D001591 ORTHO05D001455 8.7e-08 60.8 56 55.4
Lj3A1032T70 Lonicera japonica HOM05D001591 ORTHO05D001455 8.7e-08 60.8 54 59.3
PGR044G1706 Punica granatum HOM05D001591 ORTHO05D001455 1.1e-07 60.5 50 62.0
vmacro17580 Vaccinium macrocarpon HOM05D001591 ORTHO05D001455 1.1e-07 60.5 67 50.7
CDE02G4700 Ceratophyllum demersum HOM05D001591 ORTHO05D001455 1.5e-07 60.1 50 60.0
CDE04G1960 Ceratophyllum demersum HOM05D001591 ORTHO05D001455 1.5e-07 60.1 50 62.0
ECA246G0914 Erigeron canadensis HOM05D001591 ORTHO05D001455 1.5e-07 60.1 67 47.8
FAN12G3086 Fragaria x ananassa HOM05D056060 ORTHO05D209323 1.5e-07 60.1 31 90.3
HanXRQChr17g0545431 Helianthus annuus HOM05D001591 ORTHO05D001455 1.5e-07 60.1 67 49.3
Peaxi162Scf00274g00024 Petunia axillaris HOM05D001591 ORTHO05D001455 1.5e-07 60.1 54 55.6
TPR.G2002 Trifolium pratense HOM05D001591 ORTHO05D001455 1.5e-07 60.1 50 62.0
HPP92_020418 Vanilla planifolia HOM05D001591 ORTHO05D001455 1.5e-07 60.1 50 62.0
Ciclev10022544m.g Citrus clementina HOM05D001591 ORTHO05D001455 1.9e-07 59.7 55 58.2
Hma1.2p1_0357F.1_g134360 Hydrangea macrophylla HOM05D001591 ORTHO05D001455 1.9e-07 59.7 52 59.6
Medtr4g109140 Medicago truncatula HOM05D001591 ORTHO05D001455 1.9e-07 59.7 50 62.0
CAN.G479.51 Capsicum annuum HOM05D001591 ORTHO05D001455 2.5e-07 59.3 54 55.6
Rhsim08G0150300 Rhododendron simsii HOM05D001591 ORTHO05D001455 3.3e-07 58.9 67 50.7
FAN12G1739 Fragaria x ananassa HOM05D056060 ORTHO05D210577 4.3e-07 58.5 31 90.3
Oeu063379.1 Olea europaea HOM05D001591 ORTHO05D001455 4.3e-07 58.5 61 47.5
Glyma.17G103200 Glycine max HOM05D001591 ORTHO05D001455 5.7e-07 58.2 50 62.0
Psat4g049040 Pisum sativum HOM05D001591 ORTHO05D001455 5.7e-07 58.2 50 60.0
Ca_21798_v3 Cicer arietinum L. HOM05D001591 ORTHO05D001455 7.4e-07 57.8 50 64.0
Rhsim12G0077500 Rhododendron simsii HOM05D001591 ORTHO05D001455 1.3e-06 57.0 52 55.8
MSTRG.18981 Avicennia marina HOM05D001591 ORTHO05D001455 2.2e-06 56.2 50 52.0
Phvul.003G187400 Phaseolus vulgaris HOM05D001591 ORTHO05D001455 2.2e-06 56.2 50 60.0
Zm00001eb286400 Zea mays HOM05D001591 ORTHO05D001455 2.2e-06 56.2 72 45.8
Lj1g0020229 Lotus japonicus HOM05D001591 ORTHO05D001455 3.7e-06 55.5 61 42.6
Lj4g0008350 Lotus japonicus HOM05D001591 ORTHO05D001455 3.7e-06 55.5 50 64.0
VMungo1215G2713 Vigna mungo HOM05D001591 ORTHO05D001455 3.7e-06 55.5 50 58.0
Medtr7g070000 Medicago truncatula HOM05D001591 ORTHO05D001455 4.8e-06 55.1 61 42.6
SGA_v2.0_scaffold238G43925 Striga asiatica HOM05D001591 ORTHO05D001455 4.8e-06 55.1 50 50.0
Duzib128G0803 Durio zibethinus HOM05D001591 ORTHO05D001455 6.3e-06 54.7 63 44.4
Nn2g10993 Nelumbo nucifera HOM05D001591 ORTHO05D001455 6.3e-06 54.7 53 47.2
Thecc.05G008100 Theobroma cacao HOM05D001591 ORTHO05D001455 6.3e-06 54.7 63 44.4
TPR.G6635 Trifolium pratense HOM05D001591 ORTHO05D001455 6.3e-06 54.7 61 42.6
unitig_22.g6596 Utricularia gibba HOM05D001591 ORTHO05D001455 6.3e-06 54.7 50 50.0
GSVIVG01010096001 Vitis vinifera HOM05D001591 ORTHO05D001455 6.3e-06 54.7 75 46.7
Eucgr.K02959 Eucalyptus grandis HOM05D001591 ORTHO05D001455 8.2e-06 54.3 50 48.0
FAN14G1832 Fragaria x ananassa HOM05D014348 ORTHO05D208415 8.2e-06 54.3 33 78.8


User provided reference genes

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