Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.0e-73 278.5 146 100.0
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.6e-66 256.1 141 97.2
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 7.3e-64 247.3 141 95.0
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 7.3e-64 247.3 141 95.0
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 6.2e-63 244.2 141 93.6
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 1.1e-48 196.8 133 82.7
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 2.0e-37 159.5 135 71.9
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 4.5e-37 158.3 149 62.4
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 3.8e-36 155.2 143 66.4
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 5.0e-36 154.8 136 68.4
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 6.5e-36 154.5 133 68.4
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 1.1e-35 153.7 135 68.1
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 3.2e-35 152.1 133 67.7
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 3.2e-35 152.1 133 67.7
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 5.5e-35 151.4 118 72.0
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 4.6e-34 148.3 150 61.3
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 6.1e-34 147.9 138 65.2
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 7.9e-34 147.5 141 63.1
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 1.0e-33 147.1 118 71.2
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 1.4e-33 146.7 131 63.4
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 1.8e-33 146.4 144 61.8
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 1.8e-33 146.4 147 61.9
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 1.8e-33 146.4 121 73.6
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 2.3e-33 146.0 151 61.6
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 6.7e-33 144.4 143 59.4
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 1.5e-32 143.3 142 59.9
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.5e-32 143.3 129 65.9
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 1.9e-32 142.9 129 65.9
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 3.3e-32 142.1 140 62.1
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 4.3e-32 141.7 138 63.8
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 5.7e-32 141.4 127 62.2
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 5.7e-32 141.4 127 62.2
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 7.4e-32 141.0 78 92.3
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.3e-31 140.2 119 71.4
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 1.3e-31 140.2 136 61.0
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 1.3e-31 140.2 133 63.9
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 1.3e-31 140.2 132 65.2
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 1.7e-31 139.8 133 62.4
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 2.2e-31 139.4 134 63.4
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 3.7e-31 138.7 117 65.8
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 3.7e-31 138.7 132 65.2
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 4.8e-31 138.3 107 71.0
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 8.2e-31 137.5 118 66.1
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 8.2e-31 137.5 135 61.5
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 8.2e-31 137.5 135 61.5
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 8.2e-31 137.5 131 66.4
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 1.1e-30 137.1 137 59.1
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 1.1e-30 137.1 126 62.7
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 1.4e-30 136.7 119 68.9
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 2.4e-30 136.0 116 69.8
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 4.1e-30 135.2 96 77.1
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 5.3e-30 134.8 134 62.7
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 5.3e-30 134.8 133 63.2
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 5.3e-30 134.8 107 68.2
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 6.9e-30 134.4 132 60.6
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 9.1e-30 134.0 118 64.4
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 9.1e-30 134.0 121 66.1
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 9.1e-30 134.0 103 68.9
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 9.1e-30 134.0 138 62.3
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 1.2e-29 133.7 135 61.5
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 1.5e-29 133.3 140 61.4
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 1.5e-29 133.3 130 61.5
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 2.0e-29 132.9 72 90.3
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 2.6e-29 132.5 119 67.2
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 3.4e-29 132.1 155 56.8
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 3.4e-29 132.1 118 65.3
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 3.4e-29 132.1 158 55.1
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 3.4e-29 132.1 151 55.0
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 3.4e-29 132.1 118 65.3
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 3.4e-29 132.1 136 59.6
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 4.5e-29 131.7 94 76.6
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 4.5e-29 131.7 144 60.4
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 4.5e-29 131.7 132 60.6
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 4.5e-29 131.7 92 79.3
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 7.7e-29 131.0 142 54.2
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 7.7e-29 131.0 119 64.7
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 7.7e-29 131.0 132 58.3
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 1.0e-28 130.6 117 66.7
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 1.0e-28 130.6 117 66.7
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 1.0e-28 130.6 117 66.7
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 1.7e-28 129.8 121 64.5
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 1.7e-28 129.8 136 58.1
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 3.8e-28 128.6 92 78.3
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 5.0e-28 128.3 105 71.4
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 5.0e-28 128.3 118 62.7
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 6.5e-28 127.9 131 58.0
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 8.5e-28 127.5 127 61.4
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 1.4e-27 126.7 126 64.3
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 1.9e-27 126.3 139 57.6
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 2.5e-27 125.9 138 55.8
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 3.2e-27 125.6 131 57.3
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 4.2e-27 125.2 143 51.0
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 5.5e-27 124.8 98 70.4
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 7.2e-27 124.4 152 52.0
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 9.4e-27 124.0 137 56.9
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 1.2e-26 123.6 147 54.4
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 2.7e-26 122.5 134 56.0
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 3.6e-26 122.1 73 83.6
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 4.7e-26 121.7 76 81.6
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 4.7e-26 121.7 78 78.2
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 6.1e-26 121.3 79 81.0
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 1.8e-25 119.8 74 82.4
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 3.0e-25 119.0 115 63.5
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 3.0e-25 119.0 76 80.3
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 3.0e-25 119.0 89 71.9
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 6.7e-25 117.9 148 54.1
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 4.4e-24 115.2 98 68.4
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 9.7e-24 114.0 85 67.1
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 1.3e-23 113.6 110 60.9
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 7.0e-22 107.8 81 67.9
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 5.9e-21 104.8 96 60.4
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 7.7e-21 104.4 84 64.3
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 1.0e-17 94.0 124 52.4
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 1.4e-17 93.6 84 57.1
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 1.4e-14 83.6 85 49.4
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 3.5e-13 79.0 86 51.2
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 4.8e-07 58.5 65 53.8
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 4.8e-07 58.5 65 53.8
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.8e-06 56.6 49 63.3


User provided reference genes

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