Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 0.0e+00 1821.2 914 100.0
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 0.0e+00 1731.1 940 93.9
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 0.0e+00 1690.6 926 92.5
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 0.0e+00 1688.7 956 90.7
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 0.0e+00 1656.7 956 89.4
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 0.0e+00 1261.5 968 70.8
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 5.6e-194 682.2 953 45.9
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 1.4e-141 508.1 685 47.2
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 5.6e-85 320.1 793 33.0
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 2.1e-84 318.2 928 30.1
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.4e-83 315.5 927 30.0
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 1.9e-80 305.1 774 32.6
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 1.3e-73 282.3 959 29.3
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 3.9e-70 270.8 920 28.6
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 1.1e-67 262.7 755 30.3
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 1.8e-59 235.3 812 29.3
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 3.4e-58 231.1 936 27.4
FAN18G4344 Fragaria x ananassa HOM05D002477 ORTHO05D001927 3.5e-55 221.1 755 27.9
FAN13G2553 Fragaria x ananassa HOM05D002477 ORTHO05D001927 6.0e-55 220.3 749 27.2
FAN18G0342 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.3e-54 219.2 755 27.8
FvH4_5g11840 Fragaria vesca HOM05D002477 ORTHO05D001927 5.1e-54 217.2 755 27.8
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 1.1e-51 209.5 896 26.1
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 3.1e-51 208.0 945 26.3
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.4e-50 204.5 939 25.5
FAN08G2173 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.2e-49 201.8 758 28.0
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 2.4e-48 198.4 915 25.5
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.2e-47 196.1 910 25.8
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 1.6e-47 195.7 912 24.6
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 1.3e-46 192.6 895 27.2
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.1e-45 189.5 924 25.8
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.5e-45 189.1 898 25.8
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.6e-44 185.7 920 25.8
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 3.7e-44 184.5 941 25.0
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 8.2e-44 183.3 786 26.7
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 2.6e-42 178.3 815 26.7
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 3.8e-41 174.5 348 37.4
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 4.9e-41 174.1 333 36.3
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 6.5e-41 173.7 390 35.1
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 1.9e-40 172.2 938 23.9
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 9.3e-40 169.9 840 25.5
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 2.1e-39 168.7 361 35.2
MD12G1067700 Malus domestica HOM05D002477 ORTHO05D001927 6.0e-39 167.2 264 44.7
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 1.1e-37 162.9 868 24.5
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.9e-37 162.2 917 25.1
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 2.1e-36 158.7 940 24.4
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 3.7e-36 157.9 987 24.2
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 6.3e-36 157.1 963 24.1
Dinv24130 Davidia involucrata HOM05D002477 ORTHO05D001927 1.5e-34 152.5 406 32.5
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 1.0e-33 149.8 886 23.7
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.2e-33 148.7 909 23.9
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 1.9e-32 145.6 995 23.6
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.6e-31 142.5 926 23.3
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.0e-30 138.3 270 35.9
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 1.9e-29 135.6 320 31.9
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 3.3e-29 134.8 811 24.4
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 3.7e-28 131.3 446 29.1
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 8.2e-28 130.2 322 33.5
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 1.5e-26 125.9 863 23.3
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 1.5e-26 125.9 755 24.9
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 2.6e-26 125.2 310 36.5
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 5.9e-26 124.0 344 31.1
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 8.5e-25 120.2 253 32.4
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 1.4e-24 119.4 163 42.3
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 3.2e-24 118.2 753 22.2
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 9.4e-24 116.7 395 29.6
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea HOM05D002477 ORTHO05D001927 1.6e-23 115.9 273 31.9
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea HOM05D002477 ORTHO05D001927 1.6e-23 115.9 273 31.9
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 3.6e-23 114.8 755 22.9
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 4.6e-23 114.4 326 30.7
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 4.6e-23 114.4 843 22.2
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 1.4e-22 112.8 213 38.5
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.8e-22 112.5 854 23.7
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 2.3e-22 112.1 145 40.0
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 3.0e-22 111.7 146 43.2
Hund24730 Selenicereus undatus HOM05D002477 ORTHO05D001927 3.0e-22 111.7 279 30.8
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 5.1e-22 110.9 803 23.5
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 5.1e-22 110.9 322 31.7
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 6.7e-22 110.5 842 21.9
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 1.1e-21 109.8 156 41.0
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 2.0e-21 109.0 162 40.1
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.6e-21 108.6 845 22.2
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 3.3e-21 108.2 211 36.5
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 3.3e-21 108.2 187 35.8
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 4.4e-21 107.8 297 31.6
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 5.7e-21 107.5 159 40.3
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.7e-21 107.5 152 36.8
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 7.4e-21 107.1 747 22.2
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 2.2e-20 105.5 914 23.2
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 4.8e-20 104.4 247 33.2
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 1.1e-19 103.2 785 23.2
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.4e-19 102.8 129 44.2
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 1.8e-19 102.4 203 34.5
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 3.1e-19 101.7 181 36.5
Sp5g23040 Schrenkiella parvula HOM05D002477 ORTHO05D001927 4.1e-19 101.3 127 45.7
Sc25g0005240 Simmondsia chinensis HOM05D002477 ORTHO05D001927 5.3e-19 100.9 187 36.9
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 5.3e-19 100.9 749 22.3
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 6.9e-19 100.5 130 44.6
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 1.2e-18 99.8 146 39.0
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 1.2e-18 99.8 151 35.8
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 2.0e-18 99.0 130 43.1
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 2.0e-18 99.0 817 22.4
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 2.6e-18 98.6 149 41.6
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 2.6e-18 98.6 704 24.4
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 3.4e-18 98.2 218 34.9
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 3.4e-18 98.2 205 35.1
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.3e-17 96.3 131 41.2
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 1.7e-17 95.9 124 42.7
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.7e-17 95.9 849 21.2
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 2.2e-17 95.5 310 30.6
Ah.04g151880 Amaranthus hybridus HOM05D002477 ORTHO05D001927 2.9e-17 95.1 280 30.7
MD12G1067800 Malus domestica HOM05D002477 ORTHO05D001927 2.9e-17 95.1 99 50.5
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 3.8e-17 94.7 286 28.7
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 3.8e-17 94.7 164 37.2
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 5.0e-17 94.4 115 41.7
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 8.5e-17 93.6 215 31.6
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 1.1e-16 93.2 759 22.4
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 1.9e-16 92.4 205 33.7
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 1.9e-16 92.4 212 31.1
Sc19g0006700 Simmondsia chinensis HOM05D002477 ORTHO05D001927 4.2e-16 91.3 235 30.6
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 7.2e-16 90.5 132 40.9
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 9.4e-16 90.1 168 36.3
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 9.4e-16 90.1 112 40.2
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 7.9e-15 87.0 152 34.9
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 7.9e-15 87.0 152 34.9
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 7.9e-15 87.0 213 32.4
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 1.8e-14 85.9 217 31.3
HPP92_005494 Vanilla planifolia HOM05D002477 ORTHO05D001927 2.3e-14 85.5 155 36.1
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 3.0e-14 85.1 168 33.9
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 6.7e-14 84.0 158 34.8
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 2.6e-13 82.0 144 31.9
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 4.4e-13 81.3 268 27.6
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 7.4e-13 80.5 261 28.4
BcaNung05110 Brassica carinata HOM05D002477 ORTHO05D001927 7.4e-13 80.5 261 28.4
Lj5g0016725 Lotus japonicus HOM05D002477 ORTHO05D001927 7.4e-13 80.5 445 22.7
SGA_v2.0_scaffold135G34972 Striga asiatica HOM05D002477 ORTHO05D001927 9.7e-13 80.1 120 38.3
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 1.3e-12 79.7 139 36.0
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 1.3e-12 79.7 162 34.6
ATR0757G170 Amborella trichopoda HOM05D002477 ORTHO05D001927 1.7e-12 79.3 187 32.6
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 1.7e-12 79.3 130 40.0
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 1.7e-12 79.3 145 33.8
Potri.006G054401 Populus trichocarpa HOM05D002477 ORTHO05D001927 1.7e-12 79.3 259 32.4
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 1.7e-12 79.3 144 34.7
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 6.3e-12 77.4 146 34.2
BcaC05g25396 Brassica carinata HOM05D010589 ORTHO05D001927 1.1e-11 76.6 144 33.3
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.8e-11 75.9 218 28.9
Carub.0001s1457 Capsella rubella HOM05D010589 ORTHO05D001927 2.4e-11 75.5 143 36.4
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 2.4e-11 75.5 201 31.3
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 7.0e-11 73.9 302 26.2
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 1.6e-10 72.8 289 24.6
SHI33652 Sapria himalayana HOM05D002477 ORTHO05D001927 1.6e-10 72.8 251 26.3
CDE02G2179 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 2.0e-10 72.4 133 35.3
CARHR015310 Cardamine hirsuta HOM05D010589 ORTHO05D001927 2.6e-10 72.0 145 33.8
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 5.9e-10 70.9 152 32.2
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 5.9e-10 70.9 152 32.2
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 5.9e-10 70.9 151 31.1
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.7e-10 70.5 148 33.1
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.7e-10 70.5 151 30.5
PSO063G1512 Papaver somniferum HOM05D002477 ORTHO05D001927 7.7e-10 70.5 139 29.5
SalBow5G2191 Salvia bowleyana HOM05D002477 ORTHO05D001927 1.3e-09 69.7 117 37.6
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 5.0e-09 67.8 107 39.3
unitig_744.g24381 Utricularia gibba HOM05D002477 ORTHO05D001927 5.0e-09 67.8 265 26.0
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 3.2e-08 65.1 248 27.4
BcaB01g06386 Brassica carinata HOM05D010589 ORTHO05D001927 4.2e-08 64.7 135 33.3
CDE12G0621 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 9.4e-08 63.5 95 38.9
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 1.2e-07 63.2 129 34.1
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 1.2e-07 63.2 215 25.6
Eucgr.L02969 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.2e-07 63.2 96 38.5
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 1.6e-07 62.8 158 27.2
MD15G1066500 Malus domestica HOM05D000240 ORTHO05D002721 1.6e-07 62.8 153 31.4
Aa31LG1G320 Aethionema arabicum HOM05D010589 ORTHO05D001927 2.1e-07 62.4 131 31.3
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 2.7e-07 62.0 120 31.7
Eucgr.H02945 Eucalyptus grandis HOM05D002477 ORTHO05D001927 3.6e-07 61.6 94 38.3
Manes.14G007105 Manihot esculenta HOM05D002477 ORTHO05D001927 3.6e-07 61.6 286 29.4
Sed0002535 Sechium edule HOM05D002477 ORTHO05D001927 4.7e-07 61.2 242 26.4
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 8.0e-07 60.5 134 29.1
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 8.0e-07 60.5 134 29.1
vmacro09464 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 1.4e-06 59.7 141 30.5
Manes.09G027501 Manihot esculenta HOM05D002477 ORTHO05D001927 3.0e-06 58.5 124 34.7
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 4.0e-06 58.2 128 30.5
Eucgr.K01371 Eucalyptus grandis HOM05D002477 ORTHO05D001927 5.2e-06 57.8 93 31.2
Rhsim04G0031500 Rhododendron simsii HOM05D002477 ORTHO05D001927 6.7e-06 57.4 188 22.9
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 8.8e-06 57.0 180 26.1


User provided reference genes

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