Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.3e-55 219.5 114 100.0
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.2e-50 203.0 109 96.3
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.6e-50 201.4 109 96.3
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 9.5e-35 150.2 111 78.4
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.5e-35 150.2 111 78.4
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.5e-27 125.6 122 64.8
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-25 120.2 131 59.5
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 2.0e-24 115.9 132 55.3
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 2.6e-24 115.5 130 54.6
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 3.4e-24 115.2 128 55.5
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 3.4e-24 115.2 129 55.0
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 5.8e-24 114.4 130 53.8
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 2.2e-23 112.5 130 52.3
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 2.2e-23 112.5 78 76.9
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 2.9e-23 112.1 127 54.3
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 3.8e-23 111.7 77 75.3
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 3.8e-23 111.7 77 75.3
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.9e-23 111.3 128 55.5
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 4.9e-23 111.3 77 77.9
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.4e-23 110.9 128 55.5
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 8.4e-23 110.5 87 65.5
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.4e-23 110.5 128 55.5
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.9e-22 109.4 77 76.6
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.9e-22 109.4 123 55.3
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.9e-22 109.4 134 53.0
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.2e-22 108.6 128 54.7
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 4.2e-22 108.2 75 76.0
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 5.4e-22 107.8 75 77.3
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 5.4e-22 107.8 70 77.1
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 5.4e-22 107.8 100 67.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 9.3e-22 107.1 70 77.1
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 9.3e-22 107.1 124 54.8
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 9.3e-22 107.1 124 54.8
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 9.3e-22 107.1 134 49.3
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.2e-21 106.7 134 49.3
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.2e-21 106.7 87 63.2
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.6e-21 106.3 84 66.7
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.1e-21 105.9 131 52.7
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 2.1e-21 105.9 102 64.7
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.7e-21 105.5 137 51.1
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 2.7e-21 105.5 84 64.3
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 2.7e-21 105.5 63 84.1
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 3.5e-21 105.1 121 53.7
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 3.5e-21 105.1 78 71.8
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 4.6e-21 104.8 127 51.2
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.6e-21 104.8 79 69.6
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 6.0e-21 104.4 87 60.9
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 6.0e-21 104.4 124 53.2
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 6.0e-21 104.4 124 53.2
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.0e-21 104.4 66 78.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 6.0e-21 104.4 83 65.1
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 7.8e-21 104.0 63 81.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 7.8e-21 104.0 133 51.1
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 7.8e-21 104.0 98 60.2
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 7.8e-21 104.0 63 82.5
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.0e-20 103.6 75 72.0
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-20 103.2 78 70.5
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.3e-20 103.2 78 70.5
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.3e-20 103.2 134 52.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.7e-20 102.8 98 61.2
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.7e-20 102.8 75 72.0
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 3.0e-20 102.1 79 64.6
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 3.0e-20 102.1 62 80.6
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.9e-20 101.7 63 81.0
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 5.1e-20 101.3 77 71.4
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.1e-20 101.3 78 71.8
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 5.1e-20 101.3 78 71.8
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 5.1e-20 101.3 132 47.0
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 6.6e-20 100.9 78 69.2
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 6.6e-20 100.9 78 69.2
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 6.6e-20 100.9 80 68.8
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 6.6e-20 100.9 78 70.5
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 8.7e-20 100.5 63 79.4
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 8.7e-20 100.5 133 46.6
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.1e-19 100.1 78 69.2
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.1e-19 100.1 63 76.2
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.1e-19 100.1 78 69.2
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.5e-19 99.8 73 72.6
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.5e-19 99.8 102 57.8
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.5e-19 99.8 123 48.8
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.9e-19 99.4 61 78.7
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.9e-19 99.4 78 69.2
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 2.5e-19 99.0 118 52.5
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 2.5e-19 99.0 118 52.5
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 3.3e-19 98.6 94 59.6
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 3.3e-19 98.6 94 59.6
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 3.3e-19 98.6 113 54.9
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.3e-19 98.6 64 76.6
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 3.3e-19 98.6 68 72.1
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 4.3e-19 98.2 75 70.7
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 5.6e-19 97.8 90 61.1
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 5.6e-19 97.8 124 51.6
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 7.3e-19 97.4 63 77.8
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 7.3e-19 97.4 118 52.5
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.3e-19 97.4 64 75.0
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 9.6e-19 97.1 92 57.6
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 9.6e-19 97.1 63 73.0
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.6e-18 96.3 62 75.8
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 2.1e-18 95.9 63 74.6
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 2.1e-18 95.9 133 46.6
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 2.1e-18 95.9 62 74.2
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 2.1e-18 95.9 77 64.9
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.8e-18 95.5 122 50.8
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.6e-18 95.1 104 52.9
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 6.2e-18 94.4 126 45.2
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 1.1e-17 93.6 113 55.8
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.1e-17 93.6 62 74.2
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.4e-17 93.2 63 73.0
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 6.9e-17 90.9 65 67.7
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 6.9e-17 90.9 63 69.8
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 3.4e-16 88.6 62 72.6
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.7e-15 86.3 74 64.9
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.2e-15 85.9 63 66.7
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.9e-15 85.5 77 58.4
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.1e-13 79.3 57 71.9
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.3e-12 76.6 63 61.9
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 6.7e-12 74.3 100 48.0
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 2.5e-11 72.4 57 61.4
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 7.4e-11 70.9 59 57.6
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 9.6e-11 70.5 43 79.1
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.3e-10 70.1 43 76.7
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.4e-09 66.6 108 38.9
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 5.3e-09 64.7 43 74.4
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 4.5e-08 61.6 44 68.2
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 4.5e-08 61.6 44 68.2
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 4.5e-08 61.6 44 68.2
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 9.9e-08 60.5 42 66.7
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.3e-07 60.1 43 76.7
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 2.9e-07 58.9 68 44.1
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.4e-06 56.6 43 65.1


User provided reference genes

Program Settings