Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1449 Fragaria x ananassa HOM05D006353 ORTHO05D007993 1.6e-219 765.8 387 100.0
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 8.3e-123 444.5 395 67.1
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 1.2e-121 440.7 363 69.4
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 6.0e-121 438.3 289 82.7
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 3.4e-116 422.5 289 79.9
FAN05G5674 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.3e-104 383.3 281 76.2
RcHm_v2.0_Chr3g0460831 Rosa chinensis HOM05D006353 ORTHO05D007993 4.3e-95 352.4 344 61.3
Prupe.6G291400 Prunus persica HOM05D006353 ORTHO05D007993 9.7e-63 245.0 279 54.1
MD12G1185800 Malus domestica HOM05D006353 ORTHO05D007993 5.1e-56 222.6 328 47.6
CiPaw.09G219300 Carya illinoinensis HOM05D006353 ORTHO05D007993 7.2e-34 149.1 295 39.0
Lj1g0007888 Lotus japonicus HOM05D006353 ORTHO05D007993 1.3e-30 138.3 291 38.5
Cfa017056 Carpinus fangiana HOM05D006353 ORTHO05D007993 1.8e-29 134.4 290 36.9
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 1.2e-28 131.7 308 34.4
CARHR133200 Cardamine hirsuta HOM05D006353 ORTHO05D007993 2.2e-27 127.5 284 34.5
Sp4g20840 Schrenkiella parvula HOM05D006353 ORTHO05D007993 2.9e-27 127.1 284 33.5
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 5.0e-27 126.3 296 33.8
Thhalv10016859m.g Eutrema salsugineum HOM05D006353 ORTHO05D007993 5.0e-27 126.3 288 34.0
Glyma.18G215200 Glycine max HOM05D006353 ORTHO05D007993 5.0e-27 126.3 291 38.1
Phvul.008G084100 Phaseolus vulgaris HOM05D006353 ORTHO05D007993 8.5e-27 125.6 318 35.8
Haze_21157 Corylus avellana HOM05D006353 ORTHO05D007993 1.5e-26 124.8 267 35.2
Duzib212G0771 Durio zibethinus HOM05D006353 ORTHO05D007993 1.5e-26 124.8 304 34.5
Carub.0004s2049 Capsella rubella HOM05D006353 ORTHO05D007993 2.5e-26 124.0 286 33.2
Aa31LG5G23800 Aethionema arabicum HOM05D006353 ORTHO05D007993 3.2e-26 123.6 286 33.9
BcaC01g05532 Brassica carinata HOM05D006353 ORTHO05D007993 3.2e-26 123.6 287 32.1
C03p25230 Brassica napus HOM05D006353 ORTHO05D007993 3.2e-26 123.6 287 32.1
BolC3t14918H Brassica oleracea HOM05D006353 ORTHO05D007993 3.2e-26 123.6 287 32.1
BraA03t11371Z Brassica rapa HOM05D006353 ORTHO05D007993 3.2e-26 123.6 287 32.1
THA.LOC104806639 Tarenaya hassleriana HOM05D006353 ORTHO05D007993 9.4e-26 122.1 288 33.3
BcaB02g09176 Brassica carinata HOM05D006353 ORTHO05D007993 1.6e-25 121.3 285 32.6
Thecc.04G154100 Theobroma cacao HOM05D006353 ORTHO05D007993 1.6e-25 121.3 310 33.9
A03p21360 Brassica napus HOM05D006353 ORTHO05D007993 2.1e-25 120.9 287 31.7
AL4G35790 Arabidopsis lyrata HOM05D006353 ORTHO05D007993 2.7e-25 120.6 284 32.7
AT2G38500 Arabidopsis thaliana HOM05D006353 ORTHO05D007993 3.6e-25 120.2 284 33.5
Gorai.011G129000 Gossypium raimondii HOM05D006353 ORTHO05D007993 4.7e-25 119.8 284 33.5
vmacro20360 Vaccinium macrocarpon HOM05D006353 ORTHO05D007993 4.7e-25 119.8 297 33.0
BcaC02g12001 Brassica carinata HOM05D006353 ORTHO05D007993 6.1e-25 119.4 285 32.3
QL07p032560 Quercus lobata HOM05D006353 ORTHO05D007993 8.0e-25 119.0 292 37.7
Gohir.D10G117100 Gossypium hirsutum HOM05D006353 ORTHO05D007993 1.4e-24 118.2 284 33.5
Sc20g0006870 Simmondsia chinensis HOM05D006353 ORTHO05D007993 2.3e-24 117.5 282 33.7
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 3.0e-24 117.1 294 34.0
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 3.0e-24 117.1 294 34.0
VMungo1383G2355 Vigna mungo HOM05D006353 ORTHO05D007993 3.0e-24 117.1 260 38.1
Manes.09G116500 Manihot esculenta HOM05D006353 ORTHO05D007993 4.0e-24 116.7 315 33.3
C04p09030 Brassica napus HOM05D006353 ORTHO05D007993 6.8e-24 115.9 285 31.9
BolC4t22493H Brassica oleracea HOM05D006353 ORTHO05D007993 6.8e-24 115.9 285 31.9
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 6.8e-24 115.9 284 32.4
A05p07550 Brassica napus HOM05D006353 ORTHO05D007993 1.2e-23 115.2 286 31.5
BraA05t19722Z Brassica rapa HOM05D006353 ORTHO05D007993 1.2e-23 115.2 286 31.5
Manes.08G173800 Manihot esculenta HOM05D006353 ORTHO05D007993 1.5e-23 114.8 296 32.8
Medtr7g072635 Medicago truncatula HOM05D006353 ORTHO05D007993 1.5e-23 114.8 310 34.5
Medtr7g072870 Medicago truncatula HOM05D006353 ORTHO05D007993 1.5e-23 114.8 310 34.5
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 1.5e-23 114.8 285 33.0
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 2.0e-23 114.4 294 33.0
BcaB01g03677 Brassica carinata HOM05D006353 ORTHO05D007993 2.0e-23 114.4 287 30.0
EL10Ac7g17070 Beta vulgaris HOM05D006353 ORTHO05D007993 7.5e-23 112.5 298 31.5
Ciclev10012094m.g Citrus clementina HOM05D006353 ORTHO05D007993 2.8e-22 110.5 269 32.7
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 3.7e-22 110.2 282 30.9
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 4.8e-22 109.8 304 31.2
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 1.4e-21 108.2 297 32.7
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 2.4e-21 107.5 291 30.6
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 4.1e-21 106.7 292 29.8
ClCG04G006410 Citrullus lanatus HOM05D006353 ORTHO05D007993 1.6e-20 104.8 290 32.4
CANSAT35G0573 Cannabis sativa HOM05D006353 ORTHO05D007993 1.0e-19 102.1 282 33.7
CSS0001064 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 1.7e-19 101.3 277 32.5
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 1.7e-19 101.3 300 30.7
TPR.G26913 Trifolium pratense HOM05D006353 ORTHO05D007993 6.6e-19 99.4 189 40.7
CSS0032329 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 1.2e-17 95.1 280 31.1
Lsat_1_v5_gn_8_107941 Lactuca sativa HOM05D006353 ORTHO05D007993 1.2e-17 95.1 292 29.8
ECA236G3817 Erigeron canadensis HOM05D006353 ORTHO05D007993 2.8e-17 94.0 296 29.1
Duzib151G0311 Durio zibethinus HOM05D006353 ORTHO05D007993 3.6e-17 93.6 218 32.1
BcaB01g03678 Brassica carinata HOM05D006353 ORTHO05D007993 1.8e-16 91.3 288 27.4
HanXRQChr14g0433401 Helianthus annuus HOM05D006353 ORTHO05D007993 3.0e-16 90.5 295 28.1
TWI74G0177 Tripterygium wilfordii HOM05D006353 ORTHO05D007993 3.0e-16 90.5 305 31.8
Hund19788 Selenicereus undatus HOM05D006353 ORTHO05D007993 4.0e-16 90.1 208 33.2
ECA248G0672 Erigeron canadensis HOM05D006353 ORTHO05D007993 1.5e-15 88.2 318 29.6
Ah.08g209640 Amaranthus hybridus HOM05D006353 ORTHO05D007993 3.4e-15 87.0 210 31.9
AUR62029702 Chenopodium quinoa HOM05D006353 ORTHO05D007993 4.4e-15 86.7 211 29.9
HanXRQChr16g0509461 Helianthus annuus HOM05D006353 ORTHO05D007993 1.3e-14 85.1 296 28.0
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 7.0e-13 79.3 287 28.9
Oeu026960.1 Olea europaea HOM05D006353 ORTHO05D007993 1.2e-12 78.6 292 27.4
MELO3C025210.2 Cucumis melo HOM05D006353 ORTHO05D007993 1.6e-12 78.2 222 31.1
Lsat_1_v5_gn_5_150140 Lactuca sativa HOM05D006353 ORTHO05D007993 3.5e-12 77.0 222 31.1
Sopen09g010850 Solanum pennellii HOM05D006353 ORTHO05D007993 1.7e-11 74.7 298 26.8
Dinv11379 Davidia involucrata HOM05D006353 ORTHO05D007993 3.9e-11 73.6 131 38.2
PGR004G2035 Punica granatum HOM05D006353 ORTHO05D007993 8.6e-11 72.4 314 25.5
PGSC0003DMG400004416 Solanum tuberosum HOM05D006353 ORTHO05D007993 7.3e-10 69.3 254 25.2
COL.COLO4_16553 Corchorus olitorius HOM05D006353 ORTHO05D007993 3.6e-09 67.0 131 35.9
SalBow5G5035 Salvia bowleyana HOM05D006353 ORTHO05D007993 6.1e-09 66.2 288 24.3
SalBow5G5483 Salvia bowleyana HOM05D006353 ORTHO05D007993 6.1e-09 66.2 288 24.3
MSTRG.18951 Avicennia marina HOM05D006353 ORTHO05D007993 8.0e-09 65.9 305 23.6
Sed0002935 Sechium edule HOM05D006353 ORTHO05D007993 1.0e-08 65.5 282 28.0
DCAR_018544 Daucus carota HOM05D006353 ORTHO05D007993 2.3e-08 64.3 235 27.7
Eucgr.K01277 Eucalyptus grandis HOM05D006353 ORTHO05D007993 5.8e-07 59.7 287 26.5
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 5.8e-07 59.7 319 22.9
Actinidia29043 Actinidia chinensis HOM05D006353 ORTHO05D007993 1.7e-06 58.2 124 35.5


User provided reference genes

Program Settings