Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.9e-93 345.9 179 100.0
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 3.8e-70 268.5 137 96.4
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 5.1e-67 258.1 137 93.4
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 5.1e-67 258.1 137 93.4
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.9e-66 256.1 137 92.7
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 5.6e-66 254.6 137 92.0
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 6.2e-65 251.1 137 92.7
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 2.2e-62 242.7 138 89.9
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 1.2e-47 193.7 138 71.7
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 1.1e-45 187.2 139 69.8
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 1.8e-43 179.9 138 66.7
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 1.5e-39 166.8 136 67.6
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 2.0e-39 166.4 134 67.9
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 2.5e-37 159.5 137 65.7
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 5.5e-37 158.3 139 63.3
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 7.2e-37 157.9 135 66.7
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 9.4e-37 157.5 135 64.4
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 1.2e-36 157.1 137 65.0
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 1.2e-36 157.1 135 65.9
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 1.6e-36 156.8 139 63.3
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 2.7e-36 156.0 138 65.9
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 4.7e-36 155.2 136 64.7
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 1.5e-34 150.2 136 63.2
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 5.7e-34 148.3 139 60.4
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 7.4e-34 147.9 138 62.3
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 9.7e-34 147.5 139 60.4
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 1.7e-33 146.7 137 57.7
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 2.2e-33 146.4 138 58.7
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 2.2e-33 146.4 140 59.3
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 4.8e-33 145.2 143 60.8
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 8.2e-33 144.4 141 62.4
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 8.2e-33 144.4 140 58.6
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 1.1e-32 144.1 132 60.6
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 1.8e-32 143.3 138 58.0
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 1.8e-32 143.3 145 55.2
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 3.1e-32 142.5 134 59.7
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 4.1e-32 142.1 145 55.9
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 1.2e-31 140.6 135 57.8
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 2.0e-31 139.8 139 57.6
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 2.6e-31 139.4 142 55.6
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 3.5e-31 139.0 140 60.0
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 3.5e-31 139.0 134 55.2
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 3.5e-31 139.0 134 55.2
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 4.5e-31 138.7 136 61.0
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 4.5e-31 138.7 136 57.4
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 4.5e-31 138.7 134 55.2
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 1.0e-30 137.5 134 62.7
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 1.0e-30 137.5 122 59.0
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 1.0e-30 137.5 99 64.6
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 1.0e-30 137.5 138 60.9
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 2.9e-30 136.0 140 57.1
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.9e-30 136.0 133 57.9
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 2.9e-30 136.0 133 57.9
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 2.9e-30 136.0 141 57.4
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 3.8e-30 135.6 140 56.4
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 3.8e-30 135.6 140 56.4
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 5.0e-30 135.2 140 57.1
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 5.0e-30 135.2 140 57.1
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 5.0e-30 135.2 136 56.6
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 5.0e-30 135.2 142 58.5
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 6.5e-30 134.8 140 59.3
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 8.5e-30 134.4 137 56.2
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 1.5e-29 133.7 140 57.1
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 1.5e-29 133.7 135 56.3
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 2.5e-29 132.9 133 57.1
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 3.2e-29 132.5 129 59.7
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 4.2e-29 132.1 134 59.0
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 5.5e-29 131.7 128 57.0
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 7.2e-29 131.3 142 57.0
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 2.1e-28 129.8 127 59.1
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 2.1e-28 129.8 135 54.8
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 2.7e-28 129.4 138 58.0
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 2.7e-28 129.4 138 58.0
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 1.4e-27 127.1 137 54.0
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 1.8e-27 126.7 132 55.3
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 2.3e-27 126.3 107 60.7
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 3.9e-27 125.6 142 55.6
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 6.7e-27 124.8 137 54.7
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 6.7e-27 124.8 127 56.7
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 8.8e-27 124.4 135 53.3
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 1.1e-26 124.0 132 53.8
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 1.1e-26 124.0 136 52.9
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 1.5e-26 123.6 134 53.7
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 1.5e-26 123.6 137 54.0
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 1.5e-26 123.6 135 57.0
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 4.4e-26 122.1 141 53.9
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 4.4e-26 122.1 129 51.2
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 7.4e-26 121.3 68 80.9
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 7.4e-26 121.3 137 53.3
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 1.7e-25 120.2 133 50.4
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 2.8e-25 119.4 114 57.0
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 4.8e-25 118.6 139 51.8
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 6.3e-25 118.2 140 52.9
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 1.1e-24 117.5 140 50.0
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 1.4e-24 117.1 140 50.0
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 1.8e-24 116.7 63 84.1
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 1.8e-24 116.7 166 45.2
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 1.2e-23 114.0 140 52.9
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 3.5e-23 112.5 134 48.5
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 1.0e-22 110.9 130 50.8
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 1.3e-22 110.5 142 50.0
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 2.2e-22 109.8 140 45.0
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 8.5e-22 107.8 145 48.3
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 4.2e-21 105.5 141 42.6
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 3.6e-20 102.4 129 43.4
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 1.4e-19 100.5 70 61.4
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 1.4e-19 100.5 148 43.2
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 3.1e-16 89.4 48 81.2
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 8.5e-14 81.3 48 72.9
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 1.4e-11 73.9 54 55.6
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 1.5e-10 70.5 104 36.5
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 1.5e-10 70.5 74 47.3
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 8.3e-09 64.7 56 44.6
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 1.2e-07 60.8 31 87.1
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 2.7e-07 59.7 31 87.1


User provided reference genes

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