Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1389 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.6e-100 369.4 180 100.0
FAN18G2686 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.7e-83 310.5 180 87.2
FAN03G2119 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.3e-82 308.5 180 86.7
FAN06G1918 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.0e-80 301.6 186 83.9
FAN11G3115 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.2e-79 300.1 180 84.4
FAN01G1218 Fragaria x ananassa HOM05D004516 ORTHO05D005194 7.6e-79 297.4 178 86.0
FAN16G0942 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.5e-77 292.4 170 84.7
FAN28G1425 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.6e-74 280.4 177 81.4
FAN11G1286 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.7e-73 278.5 178 79.8
FAN14G3153 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.0e-70 270.4 159 86.8
FAN14G5934 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.5e-69 265.8 178 79.2
FAN02G0941 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.6e-65 253.1 180 75.0
FAN17G2411 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.3e-64 248.1 174 74.1
FAN07G1082 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.7e-62 243.0 172 72.7
FAN14G3922 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.9e-62 242.3 178 73.0
FAN11G2926 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.4e-61 237.3 143 84.6
FAN22G0207 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-59 233.4 147 82.3
FAN14G0824 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.8e-59 233.0 185 67.6
FAN06G0871 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.2e-57 224.2 188 67.0
FAN24G3026 Fragaria x ananassa HOM05D004516 ORTHO05D005194 7.7e-55 217.6 111 91.0
FAN25G0220 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-51 206.8 143 79.0
FAN03G2067 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.7e-50 200.7 151 70.9
FAN02G1001 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.8e-49 199.1 168 58.9
FAN07G0140 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.6e-47 193.4 114 81.6
FAN05G4879 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.6e-47 192.6 96 92.7
FAN16G1746 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.7e-46 189.9 178 55.1
RcHm_v2.0_Chr5g0059411 Rosa chinensis HOM05D004516 ORTHO05D005194 2.9e-46 189.1 181 51.4
FAN18G1599 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.5e-45 186.8 173 63.0
FAN21G2951 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.1e-44 181.4 96 89.6
RcHm_v2.0_Chr6g0305091 Rosa chinensis HOM05D004516 ORTHO05D005194 4.4e-42 175.3 179 48.6
FAN05G4171 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.7e-41 173.3 148 66.2
FAN25G0522 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.1e-40 167.5 156 53.8
FAN19G1778 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.2e-39 167.2 178 53.4
FAN14G3645 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.6e-39 166.8 191 48.2
FAN02G2246 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.0e-38 164.1 106 84.0
FAN09G1164 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.1e-37 160.6 178 50.6
FAN06G4495 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.1e-36 154.8 129 69.0
FAN05G4797 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.0e-35 154.1 97 81.4
FAN08G1224 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.2e-34 150.6 102 82.4
FAN12G3269 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.4e-34 149.1 77 90.9
FAN25G0543 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.4e-34 149.1 173 48.6
FAN15G0265 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.8e-30 135.6 95 80.0
FAN21G2128 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.1e-29 134.0 85 78.8
FAN02G4561 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.2e-28 130.6 88 78.4
FAN15G0695 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.1e-28 128.3 65 89.2
FAN09G1624 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-27 127.1 176 40.3
FAN10G1325 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-27 127.1 176 40.3
FAN17G0177 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-27 127.1 176 40.3
FAN22G0748 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-27 127.1 176 40.3
FAN15G2282 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.8e-27 126.7 176 40.3
FAN10G1624 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.0e-27 125.9 176 40.3
FAN12G4265 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.2e-27 125.2 176 39.8
FAN09G4587 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.2e-26 124.0 176 39.8
FAN09G1891 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.0e-26 123.2 176 39.8
FAN17G2263 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.4e-26 122.5 176 39.8
RcHm_v2.0_Chr4g0392971 Rosa chinensis HOM05D004516 ORTHO05D005194 4.4e-26 122.1 183 37.2
FvH4_3g44301 Fragaria vesca HOM05D004516 ORTHO05D005194 1.3e-25 120.6 176 39.2
FvH4_6g33100 Fragaria vesca HOM05D004516 ORTHO05D005194 1.7e-25 120.2 97 53.6
FAN07G1842 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.9e-25 118.6 176 38.1
FAN06G3758 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.3e-25 118.2 176 39.2
FAN11G1790 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.3e-25 118.2 176 39.2
FAN15G1785 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.3e-25 118.2 176 39.2
FAN23G1267 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.3e-25 118.2 176 38.1
FAN24G2568 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.3e-25 118.2 176 39.2
FAN03G3119 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.3e-25 117.9 176 39.2
FAN07G1174 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-24 117.1 176 38.6
FAN13G0488 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.8e-24 116.7 61 86.9
FAN24G1619 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.8e-24 116.7 82 76.8
FAN03G2899 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.1e-24 115.9 176 37.5
FAN25G0689 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.1e-24 115.9 176 38.1
FAN21G3184 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.1e-24 115.5 83 78.3
FAN23G0994 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.4e-24 115.2 176 38.6
FAN03G0371 Fragaria x ananassa HOM05D004516 ORTHO05D005194 7.0e-24 114.8 176 38.6
FAN09G3758 Fragaria x ananassa HOM05D004516 ORTHO05D005194 7.0e-24 114.8 176 38.6
FAN25G3465 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.0e-23 113.2 83 77.1
FAN13G0422 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.7e-23 112.8 176 37.5
FAN25G2950 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.5e-23 112.5 178 41.0
FvH4_5g19180 Fragaria vesca HOM05D004516 ORTHO05D005194 4.5e-23 112.1 176 37.5
FAN03G3094 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.9e-23 111.7 85 72.9
FAN24G2223 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.9e-23 111.7 169 38.5
FAN12G1193 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.3e-22 109.8 176 35.8
FAN05G4935 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.6e-22 107.8 176 37.5
FAN04G1692 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.5e-21 106.3 169 36.7
FvH4_6g21610 Fragaria vesca HOM05D004516 ORTHO05D005194 4.3e-21 105.5 159 39.6
FAN26G2540 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.0e-19 99.4 149 36.9
FAN13G1456 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.4e-18 95.9 166 33.7
FAN25G3605 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.4e-18 95.5 96 57.3
FAN23G1761 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.4e-16 89.7 125 43.2
FAN07G0029 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.1e-16 89.0 176 33.5
FAN16G1053 Fragaria x ananassa HOM05D004516 ORTHO05D005194 9.2e-16 87.8 160 33.8
FAN01G0148 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.7e-15 86.3 169 33.7
FAN03G0909 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.6e-15 85.5 169 32.0
FAN27G1879 Fragaria x ananassa HOM05D004516 ORTHO05D005194 4.6e-15 85.5 46 80.4
FAN10G0238 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.0e-14 84.3 169 33.7
FvH4_6g22213 Fragaria vesca HOM05D004516 ORTHO05D005194 3.9e-14 82.4 92 41.3
FAN13G2573 Fragaria x ananassa HOM05D004516 ORTHO05D000278 3.9e-14 82.4 123 39.8
FAN24G3551 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.6e-14 81.3 100 37.0
FAN25G2769 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.6e-14 81.3 123 38.2
FAN10G1093 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.1e-13 80.9 145 36.6
FAN11G3175 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.3e-13 79.3 82 59.8
FAN21G3102 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.2e-12 77.4 92 39.1
FAN02G2369 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.1e-12 76.6 152 34.2
FAN09G3769 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.6e-12 75.9 125 39.2
FAN16G1822 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.6e-12 75.9 128 39.1
FAN28G2613 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.2e-12 75.1 92 38.0
FAN10G3675 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.1e-11 74.3 101 34.7
FAN12G3538 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.2e-10 70.9 43 86.0
FAN01G1620 Fragaria x ananassa HOM05D004516 ORTHO05D005194 2.0e-10 70.1 120 38.3
TWI56G0638 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 3.4e-10 69.3 113 30.1
TWI23G0178 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 4.4e-10 68.9 113 29.2
TWI56G0559 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 4.4e-10 68.9 113 29.2
TWI74G1447 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 4.4e-10 68.9 113 29.2
FAN19G1339 Fragaria x ananassa HOM05D004516 ORTHO05D005194 5.8e-10 68.6 90 36.7
Hma1.2p1_0921F.1_g236870 Hydrangea macrophylla HOM05D001576 ORTHO05D010219 7.5e-10 68.2 195 27.7
CiPaw.15G112900 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.7e-09 67.0 179 26.8
FAN10G2421 Fragaria x ananassa HOM05D003861 ORTHO05D003172 1.7e-09 67.0 180 30.6
Hund24086 Selenicereus undatus HOM05D000214 ORTHO05D011049 1.7e-09 67.0 117 28.2
FAN01G2695 Fragaria x ananassa HOM05D003861 ORTHO05D003172 2.2e-09 66.6 180 30.6
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 2.9e-09 66.2 141 30.5
TWI38G0149 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 3.7e-09 65.9 113 26.5
FAN20G2407 Fragaria x ananassa HOM05D000012 ORTHO05D000869 4.9e-09 65.5 45 80.0
TWI74G0018 Tripterygium wilfordii HOM05D020473 ORTHO05D026208 4.9e-09 65.5 111 29.7
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-08 64.3 95 32.6
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-08 64.3 95 32.6
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.1e-08 64.3 95 32.6
FAN24G2122 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-08 63.9 43 81.4
FAN24G3296 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.4e-08 63.9 43 81.4
FAN25G0014 Fragaria x ananassa HOM05D003861 ORTHO05D003172 2.4e-08 63.2 169 33.1
BcaB04g19609 Brassica carinata HOM05D007743 ORTHO05D004645 3.2e-08 62.8 141 29.8
CiPaw.06G026600 Carya illinoinensis HOM05D001576 ORTHO05D000401 3.2e-08 62.8 170 27.1
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.2e-08 62.8 95 31.6
FAN14G1051 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.2e-08 62.8 132 31.1
CiPaw.05G126800 Carya illinoinensis HOM05D001576 ORTHO05D000401 4.1e-08 62.4 183 25.1
FvH4_5g15962 Fragaria vesca HOM05D003861 ORTHO05D003172 4.1e-08 62.4 179 29.6
TWI56G1359 Tripterygium wilfordii HOM05D020473 ORTHO05D026208 4.1e-08 62.4 111 28.8
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 5.4e-08 62.0 95 31.6
Prupe.4G233800 Prunus persica HOM05D004516 ORTHO05D005194 7.0e-08 61.6 185 27.6
CiPaw.11G164500 Carya illinoinensis HOM05D001576 ORTHO05D000401 9.2e-08 61.2 177 25.4
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.6e-07 60.5 95 30.5
EL10Ac2g04164 Beta vulgaris HOM05D016588 ORTHO05D019835 2.0e-07 60.1 185 25.4
CiPaw.10G126200 Carya illinoinensis HOM05D001576 ORTHO05D000401 2.0e-07 60.1 171 25.7
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 2.0e-07 60.1 96 33.3
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 4.6e-07 58.9 140 25.7
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 6.0e-07 58.5 162 28.4
CiPaw.06G027900 Carya illinoinensis HOM05D001576 ORTHO05D000401 7.8e-07 58.2 179 25.1
CiPaw.07G099700 Carya illinoinensis HOM05D001576 ORTHO05D000401 7.8e-07 58.2 178 24.7
vmacro07382 Vaccinium macrocarpon HOM05D009738 ORTHO05D011821 7.8e-07 58.2 165 26.7
CiPaw.02G131900 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.0e-06 57.8 153 27.5
TWI34G0394 Tripterygium wilfordii HOM05D014549 ORTHO05D000401 1.0e-06 57.8 113 24.8
CiPaw.01G110200 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.7e-06 57.0 184 25.0
CiPaw.03G089300 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.7e-06 57.0 183 24.0
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 1.7e-06 57.0 167 27.5
HanXRQChr10g0281341 Helianthus annuus HOM05D007803 ORTHO05D000401 1.7e-06 57.0 127 25.2
SGA_v2.0_scaffold11G05878 Striga asiatica HOM05D001576 ORTHO05D000401 1.7e-06 57.0 112 27.7
SGA_v2.0_scaffold19G08588 Striga asiatica HOM05D001576 ORTHO05D000401 1.7e-06 57.0 112 27.7
SGA_v2.0_scaffold239G43990 Striga asiatica HOM05D001576 ORTHO05D000401 1.7e-06 57.0 112 27.7
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 2.3e-06 56.6 160 25.6
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 2.3e-06 56.6 164 27.4
CiPaw.10G028800 Carya illinoinensis HOM05D001576 ORTHO05D000401 2.3e-06 56.6 178 25.8
CiPaw.15G155400 Carya illinoinensis HOM05D001576 ORTHO05D000401 2.3e-06 56.6 174 24.1
FvH4_1g29461 Fragaria vesca HOM05D007743 ORTHO05D010219 2.3e-06 56.6 147 26.5
CiPaw.07G178300 Carya illinoinensis HOM05D001576 ORTHO05D000401 3.0e-06 56.2 178 25.3
CiPaw.09G130900 Carya illinoinensis HOM05D001576 ORTHO05D000401 3.0e-06 56.2 183 23.0
CiPaw.14G121300 Carya illinoinensis HOM05D001576 ORTHO05D010219 3.0e-06 56.2 171 24.6
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 3.9e-06 55.8 166 26.5
CiPaw.05G236500 Carya illinoinensis HOM05D001576 ORTHO05D000401 3.9e-06 55.8 178 25.3
CiPaw.15G133200 Carya illinoinensis HOM05D001576 ORTHO05D000401 3.9e-06 55.8 108 31.5
FAN11G2335 Fragaria x ananassa HOM05D000054 ORTHO05D000171 3.9e-06 55.8 93 33.3
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 3.9e-06 55.8 177 26.0
TWI23G0768 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 3.9e-06 55.8 164 22.6
BcaB02g10737 Brassica carinata HOM05D007743 ORTHO05D004645 5.0e-06 55.5 142 24.6
BcaB08g34421 Brassica carinata HOM05D007743 ORTHO05D004645 5.0e-06 55.5 124 29.0
BcaC01g02275 Brassica carinata HOM05D007743 ORTHO05D004645 5.0e-06 55.5 164 25.6
BcaC05g25200 Brassica carinata HOM05D000589 ORTHO05D000401 5.0e-06 55.5 124 25.8
RcHm_v2.0_Chr2g0144051 Rosa chinensis HOM05D007743 ORTHO05D010219 5.0e-06 55.5 101 29.7
CiPaw.09G014300 Carya illinoinensis HOM05D001576 ORTHO05D000401 6.6e-06 55.1 178 25.3
CiPaw.16G006000 Carya illinoinensis HOM05D001576 ORTHO05D000401 6.6e-06 55.1 104 27.9
FAN22G0239 Fragaria x ananassa HOM05D004516 ORTHO05D005194 6.6e-06 55.1 169 26.0
BolC7t45345H Brassica oleracea HOM05D000589 ORTHO05D000401 8.6e-06 54.7 111 28.8
CiPaw.01G033500 Carya illinoinensis HOM05D001576 ORTHO05D000401 8.6e-06 54.7 178 25.3
MD02G1308300 Malus domestica HOM05D005145 ORTHO05D006062 8.6e-06 54.7 95 29.5
TWI23G1120 Tripterygium wilfordii HOM05D020473 ORTHO05D000401 8.6e-06 54.7 103 30.1


User provided reference genes

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