Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1566.6 883 100.0
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1500.7 883 88.3
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1500.7 883 92.2
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 0.0e+00 1499.2 883 92.0
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1497.6 883 88.1
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1476.8 883 94.5
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1409.0 897 84.7
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 0.0e+00 1266.5 895 77.0
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 0.0e+00 1161.0 891 76.5
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 0.0e+00 1129.4 892 70.7
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 3.5e-310 1068.1 895 69.5
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 7.8e-310 1067.0 904 66.8
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 1.3e-309 1066.2 903 68.2
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 3.0e-309 1065.1 902 70.0
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 1.2e-305 1053.1 902 67.6
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 4.9e-304 1047.7 904 65.3
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 1.3e-301 1039.6 898 67.7
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 3.0e-301 1038.5 907 63.7
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 2.6e-297 1025.4 902 65.3
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 2.0e-289 999.2 907 63.8
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 6.4e-288 994.2 856 66.5
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 2.4e-287 992.3 901 63.6
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 4.6e-286 988.0 860 67.0
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 5.6e-284 981.1 901 66.3
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.3e-283 979.9 909 62.7
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 4.8e-283 978.0 909 62.5
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 6.2e-283 977.6 894 61.7
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 4.9e-280 968.0 901 64.5
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.4e-279 966.5 900 63.0
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 4.6e-278 961.4 901 62.2
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.3e-277 959.9 906 62.5
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 3.7e-275 951.8 883 60.5
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 4.0e-274 948.3 892 62.3
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.5e-273 946.4 901 62.8
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.6e-273 945.7 905 60.3
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.3e-272 943.3 905 60.2
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 3.2e-271 938.7 806 68.1
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.2e-270 936.8 915 61.5
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 1.6e-270 936.4 923 58.9
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 2.1e-270 936.0 905 61.8
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 3.5e-270 935.3 915 59.8
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 4.6e-270 934.9 900 61.0
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 1.0e-269 933.7 923 58.8
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.1e-268 930.2 887 64.7
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.1e-268 930.2 887 64.8
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 1.5e-268 929.9 915 61.4
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.5e-268 929.1 890 62.8
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.3e-268 928.7 887 64.6
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 7.4e-268 927.5 901 60.5
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.6e-267 926.4 913 61.2
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 6.2e-267 924.5 911 63.4
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 1.1e-266 923.7 792 67.4
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 1.1e-266 923.7 792 67.4
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.1e-266 923.7 913 60.8
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 1.4e-266 923.3 911 63.3
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 2.4e-266 922.5 898 63.6
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 3.1e-266 922.2 896 61.9
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 4.0e-266 921.8 898 63.8
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 6.9e-266 921.0 909 59.6
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 2.6e-265 919.1 886 61.6
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 2.2e-264 916.0 894 61.2
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 2.2e-264 916.0 898 63.6
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.5e-263 912.5 913 58.3
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 4.2e-263 911.8 889 61.5
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 5.5e-263 911.4 896 62.3
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 2.3e-261 906.0 780 67.3
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 3.7e-259 898.7 895 60.0
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 6.3e-259 897.9 863 62.6
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 1.0e-256 890.6 855 63.2
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 1.6e-254 883.2 864 58.1
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 3.3e-252 875.5 900 59.2
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.3e-251 873.6 878 58.2
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 3.7e-251 872.1 863 59.2
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 5.3e-250 868.2 897 58.0
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.7e-248 863.2 884 58.3
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 2.2e-248 862.8 915 55.6
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 1.6e-246 856.7 897 58.0
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 7.4e-244 847.8 906 55.0
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 1.4e-242 843.6 858 59.4
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 4.5e-241 838.6 897 59.1
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 2.5e-239 832.8 904 60.2
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 3.6e-238 828.9 902 60.1
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 2.3e-237 826.2 900 56.9
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 7.4e-236 821.2 917 54.6
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 5.9e-233 811.6 897 55.2
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 4.7e-230 802.0 914 54.4
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 6.1e-230 801.6 907 54.9
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 4.4e-228 795.4 861 57.1
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 2.7e-225 786.2 893 56.2
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 4.2e-223 778.9 854 55.2
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.0e-221 772.3 900 59.0
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 8.3e-219 764.6 907 55.5
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 1.4e-218 763.8 897 53.2
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 5.4e-218 761.9 880 59.9
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 7.0e-218 761.5 880 59.9
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.7e-216 756.9 897 53.1
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 6.6e-216 755.0 880 57.7
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 3.3e-215 752.7 912 51.9
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 7.2e-215 751.5 869 57.1
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.6e-214 750.4 905 51.5
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 2.1e-214 750.0 908 55.8
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 8.0e-214 748.0 859 59.7
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 8.9e-213 744.6 856 55.5
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.7e-211 739.2 858 53.6
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.3e-208 729.9 765 55.4
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 8.6e-208 728.0 839 57.1
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 2.5e-207 726.5 898 54.0
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 2.1e-206 723.4 846 54.0
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 1.6e-201 707.2 728 61.0
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 3.5e-201 706.1 906 52.1
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 6.0e-201 705.3 856 52.8
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.3e-200 703.4 875 49.5
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 6.6e-200 701.8 844 53.3
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 1.1e-199 701.0 858 50.9
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.5e-199 700.7 871 51.5
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 7.3e-199 698.4 865 53.9
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-198 697.6 842 55.0
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 4.7e-198 695.7 837 49.1
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.8e-197 693.7 831 54.2
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 8.9e-197 691.4 886 50.0
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 2.0e-196 690.3 847 53.2
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 5.8e-196 688.7 840 52.5
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 8.3e-195 684.9 870 53.0
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 4.1e-194 682.6 865 51.3
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 1.6e-193 680.6 852 53.3
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 3.5e-193 679.5 870 52.4
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 2.1e-190 670.2 830 53.6
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.1e-189 667.9 854 49.5
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 1.1e-189 667.9 849 49.9
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 4.6e-185 652.5 927 50.8
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 2.3e-184 650.2 912 51.1
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 2.5e-183 646.7 912 50.9
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 1.2e-182 644.4 911 47.5
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 2.2e-179 633.6 886 49.7
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 2.2e-179 633.6 845 50.2
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 3.8e-179 632.9 866 50.5
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 3.0e-176 623.2 807 53.7
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 2.0e-172 610.5 871 49.5
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 5.8e-172 609.0 874 49.3
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 3.3e-167 593.2 745 51.8
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 3.3e-167 593.2 769 53.1
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 6.2e-166 589.0 759 49.0
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 2.7e-161 573.5 870 49.7
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.7e-158 563.1 908 44.8
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 1.0e-155 555.1 844 49.8
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 1.6e-153 547.7 841 47.7
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 6.9e-149 532.3 731 50.9
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 1.7e-147 527.7 882 49.5
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 3.2e-146 523.5 893 46.0
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 9.1e-125 452.2 809 44.4
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 3.8e-123 446.8 440 62.5
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.9e-122 444.5 742 47.7
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 5.0e-115 419.9 884 40.7
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 8.8e-112 409.1 306 72.9
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.7e-110 404.8 647 52.4
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 4.7e-105 386.7 919 39.8
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 3.0e-104 384.0 920 39.8
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 4.4e-103 380.2 913 39.4
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.3e-102 378.6 746 39.1
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 2.8e-102 377.5 910 38.2
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 6.3e-102 376.3 887 36.5
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 2.4e-101 374.4 910 37.9
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 5.6e-82 310.1 866 36.0
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 1.8e-80 305.1 314 53.8
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 3.4e-79 300.8 882 36.1
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.7e-75 288.5 1000 34.9
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 3.9e-67 260.8 378 47.4
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 1.4e-64 252.3 376 43.4
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 3.4e-63 247.7 359 43.2
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.9e-62 243.8 297 46.5
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 9.3e-61 239.6 298 47.3
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.1e-58 232.6 462 42.0
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 1.1e-56 226.1 258 51.2
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 2.4e-56 224.9 366 43.2
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 2.6e-55 221.5 363 39.4
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 7.1e-53 213.4 322 42.2
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.2e-45 188.0 176 54.5
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 9.3e-45 186.4 314 41.4
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.7e-44 184.9 279 42.7
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 2.3e-43 181.8 97 95.9
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 4.5e-39 167.5 181 53.0
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 1.0e-35 156.4 262 56.9
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.3e-19 102.1 157 40.8
FAN22G0087 Fragaria x ananassa HOM05D024163 ORTHO05D201659 2.0e-07 62.4 60 66.7
FAN10G0058 Fragaria x ananassa HOM05D024163 ORTHO05D208155 5.9e-07 60.8 60 65.0
FAN20G1809 Fragaria x ananassa HOM05D024163 ORTHO05D205019 5.9e-07 60.8 60 65.0


User provided reference genes

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