Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.0e-265 917.5 460 100.0
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 8.9e-241 836.6 460 92.2
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.9e-241 836.6 491 88.6
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 7.8e-237 823.5 474 89.0
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.3e-236 822.0 474 88.8
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.0e-233 811.2 491 85.9
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 6.0e-221 770.8 448 87.1
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 6.1e-197 691.0 442 78.1
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 2.2e-170 602.8 442 70.6
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.4e-169 600.1 449 68.4
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 6.5e-167 591.3 439 67.7
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.5e-166 589.3 442 67.0
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 4.2e-166 588.6 442 67.4
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 7.2e-166 587.8 442 67.0
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 1.6e-165 586.6 443 65.5
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 2.1e-165 586.3 442 66.5
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 8.0e-165 584.3 435 68.3
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 6.8e-164 581.3 440 65.7
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.1e-161 573.9 435 66.7
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 1.8e-161 573.2 441 66.4
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 5.4e-161 571.6 435 66.4
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 1.6e-160 570.1 445 65.2
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 1.7e-159 566.6 438 63.2
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 2.9e-159 565.8 442 66.3
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 8.5e-159 564.3 471 61.8
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 5.5e-158 561.6 448 62.1
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 1.2e-157 560.5 445 64.9
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 3.6e-157 558.9 438 61.6
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 3.6e-157 558.9 516 57.9
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 4.7e-157 558.5 435 64.4
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 4.7e-157 558.5 435 64.4
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 6.1e-157 558.1 436 63.8
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 1.8e-156 556.6 436 64.2
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 6.8e-156 554.7 434 63.6
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 4.4e-155 552.0 414 67.4
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 9.8e-155 550.8 434 64.7
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 4.1e-153 545.4 434 64.3
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 7.0e-153 544.7 435 62.8
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 9.2e-153 544.3 437 62.5
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.2e-152 543.9 439 62.4
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 2.0e-152 543.1 486 58.8
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.0e-151 540.8 434 62.7
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 1.3e-151 540.4 445 62.2
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 2.9e-151 539.3 435 62.8
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 2.9e-151 539.3 435 62.8
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 3.8e-151 538.9 440 62.3
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 6.6e-151 538.1 435 63.9
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 8.6e-151 537.7 435 63.7
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 1.1e-150 537.3 435 63.0
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 1.1e-150 537.3 443 62.5
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.5e-150 537.0 434 62.4
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 1.5e-150 537.0 435 63.4
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 1.9e-150 536.6 552 53.8
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 1.6e-149 533.5 437 61.6
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 1.6e-149 533.5 450 61.6
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 2.1e-149 533.1 435 62.8
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 8.0e-149 531.2 433 61.4
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 1.0e-148 530.8 456 60.1
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 1.0e-148 530.8 437 62.9
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 1.4e-148 530.4 385 68.6
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 4.0e-148 528.9 471 55.6
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 6.8e-148 528.1 480 57.7
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 4.4e-147 525.4 430 59.8
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 1.3e-146 523.9 433 64.4
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 3.7e-146 522.3 439 62.6
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 2.4e-145 519.6 374 69.3
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 3.9e-143 512.3 387 64.6
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 6.6e-143 511.5 442 61.1
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 6.6e-143 511.5 385 68.3
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 1.2e-139 500.7 447 59.1
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 5.8e-139 498.4 470 56.6
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 5.8e-139 498.4 568 49.5
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 9.8e-139 497.7 439 56.3
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 2.2e-138 496.5 321 78.5
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 2.9e-138 496.1 384 65.6
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 3.7e-138 495.7 387 64.1
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.3e-135 487.3 439 57.4
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.2e-131 474.2 376 65.4
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 1.4e-129 467.2 321 70.7
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 2.4e-129 466.5 437 55.8
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 9.5e-126 454.5 412 59.2
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 6.4e-122 441.8 454 55.1
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 1.9e-121 440.3 433 51.3
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 2.3e-119 433.3 408 57.4
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 7.8e-112 408.3 431 51.3
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.1e-110 404.4 286 67.1
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 1.6e-109 400.6 323 65.9
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.1e-108 397.9 383 54.3
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 6.9e-108 395.2 288 66.0
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 1.5e-107 394.0 430 49.1
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 4.6e-104 382.5 427 48.0
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 4.0e-100 369.4 440 45.7
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 3.4e-99 366.3 251 71.7
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 4.8e-93 345.9 288 64.2
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 2.2e-90 337.0 440 42.3
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 2.7e-88 330.1 315 54.9
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 2.8e-77 293.5 359 45.4
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 8.5e-74 282.0 288 52.4
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 4.1e-60 236.5 194 60.3
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.1e-52 211.8 284 44.7
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 1.2e-51 208.4 186 61.8
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 9.4e-49 198.7 155 63.9
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.6e-48 198.0 327 38.2
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 6.3e-45 186.0 200 48.5
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.3e-42 178.3 147 61.9
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 5.0e-42 176.4 155 63.9
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.5e-41 174.9 131 64.1
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.8e-39 167.9 305 35.7
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 2.2e-37 161.0 146 62.3
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 4.1e-36 156.8 129 64.3
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 3.3e-33 147.1 92 68.5
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 2.0e-30 137.9 126 60.3
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 3.4e-30 137.1 93 66.7
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 7.8e-27 125.9 95 57.9
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 1.8e-23 114.8 373 27.9
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 4.1e-20 103.6 98 58.2
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 5.0e-18 96.7 156 34.0
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 2.7e-11 74.3 55 61.8
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 2.3e-10 71.2 69 53.6
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 1.1e-09 68.9 62 48.4
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 7.3e-09 66.2 68 50.0
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 1.6e-08 65.1 49 55.1
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 1.4e-07 62.0 69 49.3
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 1.4e-07 62.0 69 49.3
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 5.8e-06 56.6 58 50.0


User provided reference genes

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