Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 0.0e+00 1829.7 1254 100.0
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 0.0e+00 1725.7 1252 91.2
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 0.0e+00 1703.3 1254 79.3
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 0.0e+00 1379.0 1191 74.3
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 0.0e+00 1372.1 1088 84.3
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 0.0e+00 1307.7 1258 72.4
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 0.0e+00 1096.6 1250 60.8
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 0.0e+00 1078.2 1259 67.0
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 3.5e-255 885.9 1252 50.8
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 5.6e-253 878.6 1267 61.6
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 2.0e-242 843.6 1225 55.2
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 1.6e-239 833.9 1258 57.1
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 1.2e-236 824.3 1042 60.3
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 3.1e-235 819.7 1222 52.4
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 5.8e-234 815.5 1265 51.9
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 9.9e-234 814.7 624 81.4
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 4.2e-232 809.3 1033 57.0
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 6.0e-223 778.9 1042 44.8
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 4.8e-220 769.2 1042 44.1
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 9.0e-219 765.0 1025 48.7
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 3.8e-217 759.6 1046 48.3
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 2.1e-215 753.8 1053 45.0
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 5.8e-210 735.7 1053 51.7
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 2.1e-207 727.2 1216 55.4
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 2.4e-203 713.8 1203 50.0
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 1.2e-202 711.4 995 44.6
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 3.2e-200 703.4 1202 46.5
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 1.2e-199 701.4 966 46.9
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 1.7e-193 681.0 1019 44.0
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 3.8e-193 679.9 1039 51.7
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 7.2e-192 675.6 1247 48.2
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 4.7e-191 672.9 981 55.1
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 3.0e-190 670.2 1032 51.5
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 1.5e-189 667.9 755 55.8
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 3.3e-189 666.8 1170 40.1
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 8.5e-185 652.1 1040 49.6
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 1.4e-184 651.4 1238 38.9
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 1.1e-181 641.7 1243 40.9
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 2.4e-179 634.0 1235 42.1
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 3.5e-178 630.2 985 42.3
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 2.1e-175 620.9 984 44.2
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.4e-174 618.2 1244 47.4
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 2.3e-174 617.5 1163 47.3
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 5.2e-174 616.3 1171 45.1
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 5.2e-174 616.3 993 47.9
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 7.5e-173 612.5 1237 47.0
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 1.1e-171 608.6 805 42.6
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 7.0e-171 605.9 1163 41.6
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 9.1e-171 605.5 1249 36.2
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 2.7e-170 604.0 813 39.9
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 2.5e-168 597.4 1250 42.7
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 7.2e-168 595.9 1184 40.3
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 1.2e-167 595.1 817 48.1
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 2.7e-167 594.0 1164 37.6
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 1.8e-166 591.3 1028 43.3
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 5.2e-166 589.7 1213 42.4
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 5.2e-166 589.7 790 40.5
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 6.8e-166 589.3 1177 37.6
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 6.8e-166 589.3 686 54.2
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 1.7e-164 584.7 1230 36.1
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 1.3e-161 575.1 791 39.2
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 1.7e-161 574.7 792 39.1
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 8.6e-161 572.4 725 44.3
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 1.2e-159 568.5 1169 34.4
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 2.1e-159 567.8 780 39.9
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 4.7e-159 566.6 1165 42.2
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 6.1e-159 566.2 981 40.7
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 7.5e-157 559.3 1031 45.2
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 5.4e-155 553.1 734 48.6
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 7.0e-155 552.7 1162 45.4
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 2.7e-154 550.8 353 96.0
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 1.2e-151 542.0 720 43.8
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 1.2e-151 542.0 1082 43.4
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 2.8e-151 540.8 1081 43.2
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.9e-147 528.1 1388 34.5
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.4e-147 527.7 296 91.9
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 1.5e-144 518.5 1167 33.1
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 3.3e-144 517.3 1167 33.1
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 7.3e-144 516.2 1167 33.1
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 9.5e-144 515.8 973 38.8
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.1e-142 510.8 351 91.2
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 7.5e-141 506.1 1033 43.1
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 5.4e-139 500.0 1161 34.9
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 3.2e-131 474.2 720 46.1
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 3.3e-128 464.2 772 44.2
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 3.8e-124 450.7 757 44.6
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 5.4e-115 420.2 637 35.8
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 7.3e-112 409.8 1195 29.0
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 1.5e-109 402.1 222 89.2
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 8.7e-105 386.3 790 37.6
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 8.1e-103 379.8 765 38.4
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 1.3e-100 372.5 690 33.2
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 2.2e-100 371.7 196 92.9
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.1e-99 369.4 1173 47.6
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 5.1e-97 360.5 756 31.2
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 4.2e-91 340.9 199 90.5
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 7.9e-90 336.7 199 88.9
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 2.3e-89 335.1 180 94.4
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 1.1e-86 326.2 775 44.1
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 3.8e-68 264.6 555 33.5
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 8.0e-66 256.9 531 33.5
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 2.8e-63 248.4 499 44.3
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.3e-55 220.7 131 89.3
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 1.5e-51 209.5 209 50.2
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 4.5e-45 188.0 246 50.0
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 3.0e-41 175.3 333 49.8
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.6e-26 126.3 235 34.9
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 8.1e-26 124.0 305 63.9
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 1.2e-24 120.2 677 37.1
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.3e-20 106.7 220 32.3
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 3.9e-20 105.1 81 56.8
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 7.3e-19 100.9 87 57.5
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 1.1e-17 97.1 556 34.0
MBI05_g36420_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 3.4e-16 92.0 82 58.5
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 1.3e-12 80.1 78 46.2
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 3.9e-12 78.6 117 36.8
THA.LOC104808568 Tarenaya hassleriana HOM05D005622 ORTHO05D002854 2.5e-11 75.9 207 28.0
Lj2g0008256 Lotus japonicus HOM05D005622 ORTHO05D002854 1.1e-09 70.5 212 26.9
CsaV3_6G032540 Cucumis sativus L. HOM05D005622 ORTHO05D002854 5.2e-09 68.2 168 29.2
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 5.2e-09 68.2 98 32.7
Aa31LG7G8600 Aethionema arabicum HOM05D005622 ORTHO05D002854 6.8e-09 67.8 210 25.7
Oeu004580.1 Olea europaea HOM05D005622 ORTHO05D002854 6.8e-09 67.8 210 27.1
Phvul.003G043300 Phaseolus vulgaris HOM05D005622 ORTHO05D002854 3.4e-08 65.5 210 26.2
PGSC0003DMG400037705 Solanum tuberosum HOM05D005622 ORTHO05D002854 3.4e-08 65.5 210 25.2
Manes.10G007100 Manihot esculenta HOM05D005622 ORTHO05D002854 4.4e-08 65.1 245 24.9
Nitab4.5_0007438g0010 Nicotiana tabacum HOM05D005622 ORTHO05D002854 7.6e-08 64.3 167 26.3
Sp1g22250 Schrenkiella parvula HOM05D005622 ORTHO05D002854 7.6e-08 64.3 211 25.6
Sopen04g001420 Solanum pennellii HOM05D005622 ORTHO05D002854 7.6e-08 64.3 198 25.3
Cc11_g12130 Coffea canephora HOM05D005622 ORTHO05D002854 9.9e-08 63.9 179 26.8
Rhsim12G0135600 Rhododendron simsii HOM05D005622 ORTHO05D002854 9.9e-08 63.9 167 26.3
MELO3C011426.2 Cucumis melo HOM05D005622 ORTHO05D002854 1.3e-07 63.5 134 28.4
AL1G39240 Arabidopsis lyrata HOM05D005622 ORTHO05D002854 2.2e-07 62.8 211 25.1
Zm00001eb227290 Zea mays HOM05D000891 ORTHO05D000761 3.8e-07 62.0 203 23.6
CiPaw.13G042800 Carya illinoinensis HOM05D005622 ORTHO05D002854 4.9e-07 61.6 163 27.6
Thhalv10009723m.g Eutrema salsugineum HOM05D005622 ORTHO05D002854 4.9e-07 61.6 198 25.8
Thhalv10018671m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 4.9e-07 61.6 342 22.5
CSS0009290 Camellia sinensis var. sinensis HOM05D005622 ORTHO05D002854 6.4e-07 61.2 198 24.7
Haze_12341 Corylus avellana HOM05D005622 ORTHO05D002854 6.4e-07 61.2 151 28.5
Migut.E00052 Erythranthe guttata HOM05D005622 ORTHO05D002854 6.4e-07 61.2 179 26.3
Nitab4.5_0000014g0340 Nicotiana tabacum HOM05D005622 ORTHO05D002854 6.4e-07 61.2 151 27.8
AT1G26500 Arabidopsis thaliana HOM05D005622 ORTHO05D002854 8.4e-07 60.8 211 25.1
SHI08443 Sapria himalayana HOM05D005622 ORTHO05D002854 8.4e-07 60.8 202 24.8
VMungo1215G2844 Vigna mungo HOM05D005622 ORTHO05D002854 8.4e-07 60.8 185 24.9
MSTRG.13447 Avicennia marina HOM05D005622 ORTHO05D002854 1.1e-06 60.5 179 25.7
CARHR025470 Cardamine hirsuta HOM05D005622 ORTHO05D002854 1.1e-06 60.5 211 24.6
RcHm_v2.0_Chr4g0438541 Rosa chinensis HOM05D005622 ORTHO05D002854 1.1e-06 60.5 198 25.3
CAN.G497.86 Capsicum annuum HOM05D005622 ORTHO05D002854 1.4e-06 60.1 135 26.7
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 1.4e-06 60.1 150 27.3
Medtr5g044120 Medicago truncatula HOM05D005622 ORTHO05D002854 1.4e-06 60.1 200 23.5
MSTRG.4712 Avicennia marina HOM05D000891 ORTHO05D000761 1.9e-06 59.7 200 24.0
ClCG08G010340 Citrullus lanatus HOM05D005622 ORTHO05D002854 1.9e-06 59.7 172 26.7
Psat2g129840 Pisum sativum HOM05D005622 ORTHO05D002854 1.9e-06 59.7 170 24.7
Sed0021884 Sechium edule HOM05D005622 ORTHO05D002854 1.9e-06 59.7 162 27.2
GSVIVG01012216001 Vitis vinifera HOM05D005622 ORTHO05D002854 1.9e-06 59.7 179 26.3
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 2.4e-06 59.3 150 27.3
Ciclev10033964m.g Citrus clementina HOM05D005622 ORTHO05D002854 2.4e-06 59.3 163 26.4
ECA246G3879 Erigeron canadensis HOM05D005622 ORTHO05D002854 2.4e-06 59.3 221 23.5
Lj3P1030T40 Lonicera japonica HOM05D005622 ORTHO05D002854 2.4e-06 59.3 210 24.3
Thecc.02G332900 Theobroma cacao HOM05D005622 ORTHO05D002854 2.4e-06 59.3 179 25.1
Atru.chr11.1653 Acer truncatum HOM05D005622 ORTHO05D002854 3.2e-06 58.9 210 25.2
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 3.2e-06 58.9 209 26.3
PGR102G2037 Punica granatum HOM05D005622 ORTHO05D002854 3.2e-06 58.9 257 22.6
MBI05_g36422_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.2e-06 58.5 62 48.4
Aa31LG4G440 Aethionema arabicum HOM05D000891 ORTHO05D000761 5.4e-06 58.2 202 23.8
AUR62000117 Chenopodium quinoa HOM05D001669 ORTHO05D002854 5.4e-06 58.2 232 23.3
Hma1.2p1_0354F.1_g133480 Hydrangea macrophylla HOM05D005622 ORTHO05D002854 7.1e-06 57.8 159 27.7
Potri.016G086100 Populus trichocarpa HOM05D005622 ORTHO05D002854 7.1e-06 57.8 165 26.7
Sc04g0007650 Simmondsia chinensis HOM05D005622 ORTHO05D002854 7.1e-06 57.8 179 24.6
Lsat_1_v5_gn_1_46480 Lactuca sativa HOM05D001126 ORTHO05D000991 9.3e-06 57.4 82 40.2
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 9.3e-06 57.4 201 25.4


User provided reference genes

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